chr12 : 65,827,974 – 65,828,199
225 bp 61 TFs 1 linked gene
This 225 bp open chromatin element is linked to HMGA2 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HMGA2 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:65,822,974 – 65,833,199
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116_STARVED GSE30267.AFF4.HCT-116_STARVED 139 bp overlap
ARID2 4 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 221 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 225 bp overlap
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 131 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 186 bp overlap
ASH2L 3 datasets
ChIP HepG2 ENCFF207QHL 225 bp overlap
ChIP HepG2 ENCFF207QHL 225 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 219 bp overlap
BRD2 1 dataset
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 225 bp overlap
BRD3 2 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 225 bp overlap
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 225 bp overlap
BRD4 9 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 129 bp overlap
ChIP HCT-116 GSE73319.BRD4.HCT-116 225 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 208 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 225 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 225 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 120 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 77 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 103 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 225 bp overlap
CHD1 2 datasets
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 109 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 203 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 201 bp overlap
E2F7 2 datasets
ChIP IMR-90_SENES_E2F7 GSE40343.E2F7.IMR-90_SENES_E2F7 149 bp overlap
ChIP IMR-90_SENES_SHCTR GSE40343.E2F7.IMR-90_SENES_SHCTR 169 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 147 bp overlap
ESR1 1 dataset
ChIP breast_mrnahist ERP002305.ESR1.breast_mrnahist 135 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 137 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 184 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 217 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 135 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 225 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 204 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 225 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 225 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 225 bp overlap
MAFK 6 datasets
ChIP A549 ENCFF371EPR 172 bp overlap
ChIP H1 ENCFF854XWE 173 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 66 bp overlap
ChIP HepG2 ENCFF743ZOF 122 bp overlap
ChIP HepG2 ENCFF767LDG 129 bp overlap
ChIP IMR-90 ENCFF336DHZ 109 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 150 bp overlap
MED1 1 dataset
ChIP MDA-MB-231_LQ GSE95121.MED1.MDA-MB-231_LQ 225 bp overlap
MEN1 2 datasets
ChIP PC-3 GSE132827.MEN1.PC-3 225 bp overlap
ChIP SEM GSE83671.MEN1.SEM 89 bp overlap
MGA 2 datasets
ChIP HepG2 ENCFF057YJE 225 bp overlap
ChIP HepG2 ENCFF057YJE 225 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 152 bp overlap
MYC 1 dataset
ChIP U-87MG GSE36354.MYC.U-87MG 91 bp overlap
MYNN 2 datasets
ChIP HEK293 GSE76494.MYNN.HEK293 143 bp overlap
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 200 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 225 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 225 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 225 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 192 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 225 bp overlap
POLR2A 4 datasets
ChIP HCT116 ENCFF508RDJ 143 bp overlap
ChIP HCT116 ENCFF508RDJ 123 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 154 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 218 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 225 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 180 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE121355.RAD21.HCT-116 225 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 225 bp overlap
ChIP HepG2 ENCFF939HTZ 225 bp overlap
RELA 1 dataset
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 225 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 189 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 53 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 225 bp overlap
SIN3A 4 datasets
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 89 bp overlap
ChIP PFSK-1 ENCFF218MAY 225 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 60 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 210 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 225 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 225 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 188 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 207 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 225 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 141 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 205 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 195 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 187 bp overlap
SP140L 1 dataset
ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 143 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 202 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 225 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 169 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 225 bp overlap
TAF1 5 datasets
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 212 bp overlap
ChIP HepG2 ENCFF946IUP 225 bp overlap
ChIP PFSK-1 ENCFF982LZL 225 bp overlap
ChIP PFSK-1 ENCFF982LZL 89 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 225 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 225 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 218 bp overlap
TEAD1 2 datasets
ChIP HCT-116 GSE108920.TEAD1.HCT-116 225 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 200 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 91 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 82 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 166 bp overlap
TP63 2 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 127 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 108 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 225 bp overlap
YY1 2 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 143 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 158 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 169 bp overlap
ZNF652 1 dataset
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 156 bp overlap
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