chr12 : 55,726,828 55,727,197
369 bp 69 TFs 3 linked genes
This 369 bp open chromatin element is linked to CD63, CD63-AS1, and RDH5 and is bound by 69 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
CD63 1.8 kb Proximal Proximity
CD63-AS1 1.9 kb Proximal Proximity
RDH5 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:55,721,828 – 55,732,197
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 238 bp overlap
ARID4B 1 dataset
ChIP PC-3 GSE116669.ARID4B.PC-3 304 bp overlap
ARNT 3 datasets
ChIP RCC4 GSE85352.ARNT.RCC4 104 bp overlap
ChIP RCC4 GSE85352.ARNT.RCC4 74 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 369 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 122 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 72 bp overlap
BRD4 8 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 369 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 239 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 88 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 173 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 209 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 179 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 144 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 212 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 176 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 115 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 290 bp overlap
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF335XTP 118 bp overlap
DNMT3B 1 dataset
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 52 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 152 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 133 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 209 bp overlap
ESR1 3 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 304 bp overlap
ChIP MCF-7_oeJUN GSE128445.ESR1.MCF-7_oeJUN 241 bp overlap
ChIP T-47D-A_E2 GSE80358.ESR1.T-47D-A_E2 89 bp overlap
ETS1 1 dataset
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 291 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 177 bp overlap
FOXP1 2 datasets
ChIP LNCaP GSE62492.FOXP1.LNCaP 106 bp overlap
ChIP LNCaP GSE62492.FOXP1.LNCaP 104 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 200 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 179 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000EWG.GATA2.K-562 156 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 304 bp overlap
ChIP DE DE-GATA4-2 260 bp overlap
ChIP foregut GSE117136.GATA4.foregut 369 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 252 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 323 bp overlap
ChIP DE DE-GATA6-2 351 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 343 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 179 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 238 bp overlap
ChIP foregut GSE117136.GATA6.foregut 282 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 214 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 144 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 253 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 170 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 266 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 157 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 213 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 274 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 198 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 181 bp overlap
INTS13 1 dataset
ChIP HL-60_PMA GSE106359.INTS13.HL-60_PMA 136 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 115 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 176 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 176 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 369 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 159 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 206 bp overlap
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 232 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 115 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 168 bp overlap
PGR 1 dataset
ChIP T-47D-A_R5020 GSE80358.PGR.T-47D-A_R5020 134 bp overlap
POLR2A 2 datasets
ChIP GM12878 ENCFF521FXC 369 bp overlap
ChIP GM12878 ENCFF521FXC 176 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 180 bp overlap
ChIP K562 ENCFF648YPL 184 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 369 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 369 bp overlap
ChIP K562 ENCFF967GRF 316 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 59 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 94 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 88 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 103 bp overlap
SPI1 2 datasets
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 114 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 79 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 155 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 360 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 124 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 119 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 111 bp overlap
TAL1 8 datasets
ChIP K-562 GSE107726.TAL1.K-562 214 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 175 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 159 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 167 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 172 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 183 bp overlap
ChIP K562 ENCFF661CCK 220 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 126 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 241 bp overlap
ChIP K562 ENCFF931DJY 281 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 193 bp overlap
ChIP K562 ENCFF319QZT 296 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 151 bp overlap
YY1 4 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 64 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 238 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 131 bp overlap
ChIP K-562 ENCSR000EWF.YY1.K-562 177 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 115 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 196 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 335 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 106 bp overlap
ZNF711 2 datasets
ChIP HEK293T GSE145160.ZNF711.HEK293T 182 bp overlap
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 369 bp overlap