chr12 : 42,603,080 42,603,829
749 bp 96 TFs 0 linked genes
This 749 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:42,598,080 – 42,608,829
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE43720.AR.LNCaP 182 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 140 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 171 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 103 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 245 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 408 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 367 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF680YXW 348 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 228 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 204 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 286 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 128 bp overlap
ChIP H9 GSE31006.FOXP1.H9 96 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 296 bp overlap
ChIP DE DE-GATA4-2 401 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 337 bp overlap
ChIP DE DE-GATA6-2 502 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 348 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 348 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 584 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 581 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 623 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 280 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 424 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 269 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 546 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 325 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 288 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 506 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 105 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 262 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
MYF6 2 datasets
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 5 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 520 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 209 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 729 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 214 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 115 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 76 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 84 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 253 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 315 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 283 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 749 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 303 bp overlap
PPARG 2 datasets
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 650 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 622 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 749 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 201 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 523 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 541 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 422 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 377 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 472 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 321 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 331 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 220 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 218 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 660 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 543 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 546 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 230 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 333 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 681 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 388 bp overlap
SNAI2 2 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 256 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 358 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 179 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 265 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 291 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 290 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 377 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 150 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 247 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 368 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 2 datasets
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 2 datasets
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2LY_MA1572.1 12 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 300 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 245 bp overlap
ZNF263 3 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap