chr12 : 9,782,936 – 9,783,355

419 bp 68 TFs 0 linked genes

This 419 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

68 transcription factors

Arid3a 1 dataset

Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap

BRD4 1 dataset

ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 368 bp overlap

CTNNB1 1 dataset

ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 224 bp overlap

ETS1 1 dataset

ChIP GM23338 ENCFF701IZH 256 bp overlap

FOXB1 1 dataset

Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap

FOXD2 1 dataset

Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap

GLIS1 1 dataset

Motif ES_0h ES_0h-GLIS1_MA0735.2 15 bp overlap

GLIS2 1 dataset

Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap

GLIS3 1 dataset

Motif ES_0h ES_0h-GLIS3_MA0737.1 14 bp overlap

Gli1 1 dataset

Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

Isl1 1 dataset

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

KLF4 1 dataset

ChIP hiPSC GSE56567.KLF4.hiPSC 166 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEN1 1 dataset

ChIP ML-2_DMSO-180619 GSE127507.MEN1.ML-2_DMSO-180619 419 bp overlap

MXI1 2 datasets

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 204 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 124 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 271 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 150 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 77 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 263 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 198 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 176 bp overlap

ChIP hESC GSE18292.NANOG.hESC 94 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

Nr2f6 1 dataset

Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU2F3 2 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 2 datasets

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU3F4 2 datasets

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU4F1 1 dataset

Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap

POU4F2 1 dataset

Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap

POU4F3 1 dataset

Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap

POU5F1 14 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 276 bp overlap

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP H1 ENCFF698ZAP 202 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 380 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 212 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 419 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 148 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 184 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 162 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 181 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 263 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 290 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 179 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 286 bp overlap

PPARA::RXRA 2 datasets

Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap

Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 1 dataset

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 185 bp overlap

PSIP1 1 dataset

ChIP ML-2 GSE95511.PSIP1.ML-2 267 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Pparg::Rxra 2 datasets

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap

Prdm14 1 dataset

Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap

Prdm4 1 dataset

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

RELB 1 dataset

Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap

RORC 1 dataset

Motif ES_0h ES_0h-RORC_MA1151.2 10 bp overlap

RXRG 1 dataset

Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap

Rfx6 1 dataset

Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap

Rxra 1 dataset

Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 119 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 81 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 54 bp overlap

STAT1 1 dataset

Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap

Stat4 1 dataset

Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap

TCF7 1 dataset

Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

THRB 1 dataset

Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap

VEZF1 1 dataset

Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap

YY1 4 datasets

ChIP H1 ENCFF524BTL 337 bp overlap

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 120 bp overlap

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 233 bp overlap

ZFP42 1 dataset

Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap

ZNF417 1 dataset

Motif ES_0h ES_0h-ZNF417_MA1727.2 7 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 208 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

ZNF680 1 dataset

Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap

ZNF740 1 dataset

Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap

Zfp961 1 dataset

Motif ES_0h ES_0h-Zfp961_MA2126.1 8 bp overlap