chr12 : 5,395,325 – 5,395,994
669 bp 81 TFs 0 linked genes
This 669 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:5,390,325 – 5,400,994
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AR 27 datasets
ChIP LNCaP ERP003503.AR.LNCaP 243 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 156 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 218 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 226 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 189 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 238 bp overlap
ChIP LNCaP_DHT GSE114266.AR.LNCaP_DHT 156 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 126 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 260 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 174 bp overlap
ChIP LNCaP_L388M_shFOXA1_Ethanol GSE128883.AR.LNCaP_L388M_shFOXA1_Ethanol 182 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 211 bp overlap
ChIP LNCaP_R1881_HOTAIR GSE61268.AR.LNCaP_R1881_HOTAIR 155 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 244 bp overlap
ChIP LNCaP_SHCTR_R1881 GSE37345.AR.LNCaP_SHCTR_R1881 127 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 114 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 208 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 281 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 194 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 268 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 206 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 218 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 338 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 504 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 134 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 163 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 140 bp overlap
ASCL1 5 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 174 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 209 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 215 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 236 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 174 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 270 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 173 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 204 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 179 bp overlap
Bach1::Mafk 1 dataset
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 264 bp overlap
ChIP BLaER1 ENCFF364PUR 312 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 135 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000BLI.E2F6.K-562 84 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 81 bp overlap
ESR1 3 datasets
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 358 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 167 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 475 bp overlap
ESR2 1 dataset
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 65 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 3 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 55 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 192 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 184 bp overlap
FIGLA 2 datasets
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 7 datasets
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 162 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 149 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 219 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 225 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 147 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 484 bp overlap
ChIP DE DE-FOXA2-2 450 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 528 bp overlap
ChIP DE DE-GATA4-2 580 bp overlap
ChIP foregut GSE117136.GATA4.foregut 297 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 405 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 383 bp overlap
ChIP DE DE-GATA6-2 556 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP foregut GSE117136.GATA6.foregut 285 bp overlap
GLI4 1 dataset
ChIP HEK293 ENCSR211PZO.GLI4.HEK293 333 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 220 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 165 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 140 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 91 bp overlap
ChIP K562 ENCFF320EQC 94 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 287 bp overlap
MYCN 2 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 519 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 193 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 60 bp overlap
NFIB 1 dataset
Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_72h DE_72h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 1 dataset
Motif DE_72h DE_72h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA1528.2 14 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 112 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 193 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 214 bp overlap
ChIP islet ERP001456.PDX1.islet 140 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 669 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 306 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 292 bp overlap
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 218 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 88 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 240 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 406 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 220 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 445 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 504 bp overlap
SOX2 5 datasets
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 294 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 437 bp overlap
ChIP TT GSE46837.SOX2.TT 177 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 331 bp overlap
SOX21 1 dataset
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 123 bp overlap
TCF3 1 dataset
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 5 datasets
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 335 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 218 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 344 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 115 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 228 bp overlap
THRB 1 dataset
Motif DE_72h DE_72h-THRB_MA1575.2 17 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 121 bp overlap
ChIP K562 ENCFF053XDV 360 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BKU.YY1.K-562 82 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 82 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 2 datasets
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF549 1 dataset
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZNF585B 2 datasets
ChIP HEK293 ENCFF657XIZ 172 bp overlap
ChIP HEK293 ENCSR011XCI.ZNF585B.HEK293 239 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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