chr12 : 4,228,156 – 4,228,364
208 bp 75 TFs 0 linked genes
This 208 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:4,223,156 – 4,233,364
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 208 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 208 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
BRCA1 2 datasets
ChIP H1 ENCFF288NOI 86 bp overlap
ChIP WA01 ENCSR000EBX.BRCA1.WA01 156 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 96 bp overlap
CHD2 8 datasets
ChIP A-549 ENCSR067HGI.CHD2.A-549 111 bp overlap
ChIP H1 ENCFF991MKH 156 bp overlap
ChIP Hep-G2 ENCSR000EED.CHD2.Hep-G2 108 bp overlap
ChIP K-562 ENCSR000EHD.CHD2.K-562 161 bp overlap
ChIP K562 ENCFF857WME 100 bp overlap
ChIP SK-N-SH ENCFF669KMB 195 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 113 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 203 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 208 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 163 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
CTCF 11 datasets
ChIP AG04450 ENCFF116DJL 106 bp overlap
ChIP GM23338 ENCFF531QOI 65 bp overlap
ChIP H9 ENCFF152GTF 73 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 84 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 65 bp overlap
ChIP endodermal cell ENCFF471YCZ 90 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 96 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 93 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 117 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 65 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 65 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 192 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 208 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 208 bp overlap
ELK1 1 dataset
ChIP WA01 ERP002417.ELK1.WA01 135 bp overlap
ERF::NHLH1 1 dataset
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ERF::SREBF2 1 dataset
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
EZH2 5 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 208 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 204 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 208 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 208 bp overlap
ChIP T98G GSE112240.EZH2.T98G 208 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 208 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 208 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 152 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 208 bp overlap
ChIP K562 ENCFF320EQC 208 bp overlap
MAX 4 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF601FOM 208 bp overlap
ChIP H1 ENCFF914VQY 194 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 202 bp overlap
MAX::MYC 1 dataset
Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap
MITF 5 datasets
ChIP 501-mel GSE137522.MITF.501-mel 208 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 154 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 208 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 208 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
MLX 1 dataset
Motif DE_12h DE_12h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MYC 1 dataset
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NFKB1 1 dataset
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 208 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 202 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 189 bp overlap
ChIP H1 ENCFF566JSR 208 bp overlap
ChIP H1 ENCFF833NJP 154 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 2 datasets
ChIP K562 ENCFF066JWO 74 bp overlap
ChIP K562 ENCFF634XYR 61 bp overlap
REST 8 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 208 bp overlap
ChIP H1 ENCFF203SWY 198 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 99 bp overlap
ChIP K562 ENCFF758CZL 208 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 208 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 114 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 142 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 175 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 208 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 172 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 208 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 208 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 208 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 208 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 172 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 198 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 136 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 150 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 82 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
TFE3 1 dataset
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 77 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 170 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 144 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 207 bp overlap
ChIP WTC11 ENCFF699QGS 208 bp overlap
USF2 5 datasets
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
ChIP H1 ENCFF434EDF 207 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 133 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 196 bp overlap
ChIP WTC11 ENCFF139JAW 161 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 192 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 103 bp overlap
YY2 1 dataset
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
ZBTB17 1 dataset
ChIP K562 ENCFF731UTU 208 bp overlap
ZBTB33 2 datasets
ChIP K562 ENCFF911VPU 141 bp overlap
ChIP SK-N-SH ENCSR000BTS.ZBTB33.SK-N-SH 113 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 208 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 200 bp overlap
ChIP K562 ENCFF281INV 208 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
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