chr11 : 123,506,060 – 123,506,334
274 bp 74 TFs 1 linked gene
This 274 bp open chromatin element is linked to GRAMD1B and is bound by 74 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GRAMD1B 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:123,501,060 – 123,511,334
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 64 bp overlap
ASCL1 3 datasets
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 125 bp overlap
Ar 1 dataset
Motif ES_0h ES_0h-Ar_MA0007.4 16 bp overlap
Ascl2 1 dataset
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 265 bp overlap
BRD4 3 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 159 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 186 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 271 bp overlap
CREB1 4 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 126 bp overlap
ChIP GM23338 ENCFF432ZEW 274 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 158 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 126 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 53 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 148 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 245 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 175 bp overlap
ETS1 3 datasets
ChIP 786-O GSE86092.ETS1.786-O 201 bp overlap
ChIP GM23338 ENCFF701IZH 274 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 165 bp overlap
FOXA1 2 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 139 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 185 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 265 bp overlap
ChIP DE DE-FOXA2-2 249 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 173 bp overlap
FOXB1 1 dataset
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXS1 1 dataset
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
HCFC1 2 datasets
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 209 bp overlap
ChIP K-562 ENCSR000EFN.HCFC1.K-562 138 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF616FJX 270 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 274 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 211 bp overlap
MYOG 1 dataset
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 274 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 274 bp overlap
NHLH1 1 dataset
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
NR3C1 4 datasets
ChIP A-549 ENCSR000BHG.NR3C1.A-549 169 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 202 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 226 bp overlap
Motif ES_0h ES_0h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif ES_0h ES_0h-NR3C2_MA0727.2 15 bp overlap
Neurod2 1 dataset
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 253 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 266 bp overlap
PKNOX2 1 dataset
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP HeLa-S3 ENCFF773DNG 274 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 208 bp overlap
POU5F1 2 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 193 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 166 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 195 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 164 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 242 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 145 bp overlap
SIX5 4 datasets
ChIP GM12878 ENCFF766FEJ 200 bp overlap
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 223 bp overlap
ChIP H1 ENCFF942SOJ 237 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 227 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 253 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 266 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 142 bp overlap
TGIF2 1 dataset
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 139 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 274 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 12 datasets
ChIP GM12878 ENCFF908JTL 167 bp overlap
ChIP GM12891 ENCFF460SIS 274 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 157 bp overlap
ChIP GM12892 ENCFF802MHJ 237 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 176 bp overlap
ChIP H1 ENCFF524BTL 142 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 137 bp overlap
ChIP K-562 ENCSR000BKU.YY1.K-562 152 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 168 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 185 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 274 bp overlap
ChIP WA01 GSE39096.YY1.WA01 219 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 249 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 195 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF143 15 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 205 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 231 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 210 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 274 bp overlap
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 150 bp overlap
ChIP HEK293T GSE39263.ZNF143.HEK293T 223 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 217 bp overlap
ChIP HepG2 ENCFF658YIR 274 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 274 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 274 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 274 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 274 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 274 bp overlap
ChIP WTC11 ENCFF249JUK 274 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF341 3 datasets
Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 240 bp overlap
ChIP HIES_EBV-B_ZNF341_isoform1 GSE113194.ZNF341.HIES_EBV-B_ZNF341_isoform1 169 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 200 bp overlap
ZNF76 1 dataset
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
ZNF765 1 dataset
ChIP HEK293T GSE78099.ZNF765.HEK293T 198 bp overlap
ZNF770 2 datasets
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 188 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 93 bp overlap
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