chr9:128,033,544–128,034,106

chr9 : 128,033,544 – 128,034,106

562 bp 69 TFs 17 linked genes

This 562 bp open chromatin element is linked to 17 target genes and is bound by 69 transcription factors.

Linked Genes

17 genes

Gene	Expression	Dist. to TSS	Distance	Link type
SLC25A25		34.3 kb	Distal	Multiome
EEIG1		52.9 kb	Distal	Multiome
PTGES2		94.2 kb	Distal	Multiome
DPM2		96.0 kb	Distal	Multiome+HiCAR
BBLN		126.4 kb	Distal	Multiome
ST6GALNAC6		134.3 kb	Distal	Multiome
AK1		156.2 kb	Distal	Multiome
CIZ1		157.7 kb	Distal	Multiome
DNM1		169.5 kb	Distal	Multiome
ENG		208.3 kb	Distal	Multiome
FPGS		231.0 kb	Distal	Multiome
GOLGA2		242.1 kb	Distal	Multiome
SWI5		242.4 kb	Distal	Multiome
CDK9		247.8 kb	Distal	Multiome
TRUB2		288.5 kb	Distal	Multiome
COQ4		288.7 kb	Distal	Multiome
TOR2A		298.6 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

69 transcription factors

BHLHE22 1 dataset

Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap

BRD4 2 datasets

ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 278 bp overlap

ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 239 bp overlap

Bhlha15 1 dataset

Motif DE_72h DE_72h-Bhlha15_MA1472.3 8 bp overlap

ChIP HT-1080 GSE135580.CTCF.HT-1080 345 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF335XTP 170 bp overlap

ChIP BLaER1 ENCFF364PUR 218 bp overlap

ChIP BLaER1 ENCFF460KDD 251 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

ChIP GM12878 ENCFF266FYW 193 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 257 bp overlap

FIGLA 1 dataset

Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap

FOSL2 1 dataset

Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 562 bp overlap

ChIP DE DE-FOXA2-2 514 bp overlap

FOXC2 1 dataset

Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap

FOXD3 1 dataset

Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap

Foxj3 1 dataset

Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 465 bp overlap

ChIP DE DE-GATA4-2 449 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 498 bp overlap

ChIP DE DE-GATA6-2 449 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

ChIP GM12878 ENCFF653WYI 67 bp overlap

IKZF2 1 dataset

ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 321 bp overlap

ChIP PDAC GSE64557.KLF6.PDAC 319 bp overlap

ChIP HCT-116 GSE121798.MED1.HCT-116 292 bp overlap

ChIP GM12878 ENCFF615CWQ 201 bp overlap

Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap

ChIP GM12878 ENCSR278SQL.NBN.GM12878 54 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 183 bp overlap

Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap

ChIP GM12878 ENCFF259FWL 61 bp overlap

NHLH2 1 dataset

Motif DE_72h DE_72h-NHLH2_MA1529.2 16 bp overlap

NR2F2 1 dataset

ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 77 bp overlap

Neurod2 2 datasets

Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap

Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap

Nkx2-1 1 dataset

Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap

Olig2 1 dataset

Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap

PHIP 2 datasets

ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 259 bp overlap

ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 485 bp overlap

PITX1 1 dataset

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

POU5F1 1 dataset

ChIP hiPSC GSE56567.POU5F1.hiPSC 198 bp overlap

PRDM1 1 dataset

ChIP U266B1 GSE102360.PRDM1.U266B1 56 bp overlap

Ptf1A 2 datasets

Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap

Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap

RAD21 1 dataset

ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 142 bp overlap

ChIP GM12878 ENCSR387QUV.RELB.GM12878 65 bp overlap

Motif DE_72h DE_72h-REST_MA0138.3 20 bp overlap

RHOXF1 1 dataset

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 159 bp overlap

ChIP GM12878 ENCSR212YKD.SKIL.GM12878 91 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 492 bp overlap

SMARCA4 1 dataset

ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 66 bp overlap

ChIP DKO GSE131606.SMC1.DKO 197 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 286 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 321 bp overlap

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

STAT1::STAT2 1 dataset

Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap

Stat2 1 dataset

Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap

TBX18 1 dataset

Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap

Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap

Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap

Tcf12 1 dataset

Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap

ZBTB18 2 datasets

Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap

Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap

Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap

ZNF257 1 dataset

Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap

ZNF263 1 dataset

Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap

ZNF384 1 dataset

Motif DE_72h DE_72h-ZNF384_MA1125.2 8 bp overlap

ZNF460 1 dataset

Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap

Zfp809 1 dataset

Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap

Zfp961 1 dataset

Motif DE_72h DE_72h-Zfp961_MA2126.1 8 bp overlap

Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap