chr9 : 89,186,113 – 89,186,284
171 bp 69 TFs 1 linked gene
This 171 bp open chromatin element is linked to SHC3 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SHC3 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:89,181,113 – 89,191,284
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 3 datasets
ChIP myofibroblast GSE90772.AR.myofibroblast 171 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 171 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 171 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 171 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 171 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 171 bp overlap
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 158 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 103 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 171 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 170 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 171 bp overlap
EHMT2 5 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 171 bp overlap
ChIP HepG2 ENCFF004KYI 86 bp overlap
ChIP HepG2 ENCFF004KYI 171 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 171 bp overlap
ChIP K562 ENCFF053BWO 171 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 135 bp overlap
ESR1 7 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 84 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 156 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 171 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 171 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 171 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 152 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 171 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 171 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 120 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 127 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 79 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 88 bp overlap
HBP1 1 dataset
ChIP Hep-G2 ENCSR616WEG.HBP1.Hep-G2 102 bp overlap
HDAC2 4 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 123 bp overlap
ChIP K-562 ENCSR000AQG.HDAC2.K-562 115 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 140 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 120 bp overlap
HES4 1 dataset
ChIP HepG2 ENCFF200ZII 171 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 118 bp overlap
HSF1 2 datasets
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 171 bp overlap
ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 110 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 171 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 171 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 140 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 141 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 150 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 144 bp overlap
MIER1 2 datasets
ChIP K-562 ENCSR426MDV.MIER1.K-562 171 bp overlap
ChIP K562 ENCFF584AYC 160 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 171 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 143 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 171 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 155 bp overlap
PGR 3 datasets
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 82 bp overlap
ChIP T-47D_CR3flp_veh GSE99479.PGR.T-47D_CR3flp_veh 124 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 113 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 140 bp overlap
PRDM10 1 dataset
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 171 bp overlap
RAD21 5 datasets
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 115 bp overlap
ChIP Ishikawa ENCFF570JVV 153 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 129 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 133 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 165 bp overlap
RCOR1 3 datasets
ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 165 bp overlap
ChIP Hep-G2 ENCSR000EDQ.RCOR1.Hep-G2 116 bp overlap
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 171 bp overlap
REST 69 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 171 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 171 bp overlap
ChIP A549 ENCFF148AIS 171 bp overlap
ChIP CD4 GSE49570.REST.CD4 126 bp overlap
ChIP GM12878 ENCFF235NGC 171 bp overlap
ChIP GM12878 ENCFF943QPB 171 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 171 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 171 bp overlap
ChIP GM23338 ENCFF024TCL 171 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 171 bp overlap
ChIP GP5D GSE51234.REST.GP5D 171 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 171 bp overlap
ChIP H1 ENCFF203SWY 171 bp overlap
ChIP H1 ENCFF203SWY 171 bp overlap
ChIP H1 ENCFF429RUE 171 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 171 bp overlap
ChIP HCT116 ENCFF929AYY 171 bp overlap
ChIP HEK293 ENCFF073DOT 171 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 171 bp overlap
ChIP HL-60 ENCFF589LOF 171 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 171 bp overlap
ChIP HeLa-S3 ENCFF911DTC 171 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 171 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 171 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 171 bp overlap
ChIP HepG2 ENCFF122AWR 171 bp overlap
ChIP HepG2 ENCFF800JSL 171 bp overlap
ChIP Ishikawa ENCFF456OHV 171 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 171 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 171 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 171 bp overlap
ChIP K-562 GSE70482.REST.K-562 171 bp overlap
ChIP K562 ENCFF430APM 171 bp overlap
ChIP K562 ENCFF685YZN 171 bp overlap
ChIP K562 ENCFF688UKW 171 bp overlap
ChIP K562 ENCFF758CZL 171 bp overlap
ChIP MCF-7 ENCFF893RRD 171 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 171 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 171 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 171 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 171 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 171 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 171 bp overlap
ChIP PFSK-1 ENCFF668WMP 171 bp overlap
ChIP PFSK-1 ENCFF845VHA 171 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 171 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 171 bp overlap
ChIP Panc1 ENCFF338WSQ 71 bp overlap
ChIP Panc1 ENCFF518EEQ 171 bp overlap
ChIP Panc1 ENCFF629OJO 171 bp overlap
ChIP SK-N-SH ENCFF635KBN 171 bp overlap
ChIP SK-N-SH ENCFF861MKH 146 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 171 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 171 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 171 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 171 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 171 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 171 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 171 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 171 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 171 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 171 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 171 bp overlap
ChIP liver ENCFF240FWT 171 bp overlap
ChIP liver ENCFF577AZT 171 bp overlap
ChIP liver ENCSR893QWP.REST.liver 171 bp overlap
ChIP liver ENCSR867WPH.REST.liver 171 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 171 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 171 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 137 bp overlap
SIN3A 4 datasets
ChIP PFSK-1 ENCFF218MAY 171 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 137 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 124 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 121 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 143 bp overlap
SMARCA4 10 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 169 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 140 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 171 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 171 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 171 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 171 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 156 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 171 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 166 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 171 bp overlap
SMARCB1 5 datasets
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 164 bp overlap
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 171 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 171 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 171 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 139 bp overlap
SMARCC1 5 datasets
ChIP HeLa-S3 ENCFF971JGA 171 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 171 bp overlap
ChIP MCF-7_KO GSE124225.SMARCC1.MCF-7_KO 171 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 158 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 171 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 163 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 171 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 171 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 171 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 145 bp overlap
SP140L 1 dataset
ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 141 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 167 bp overlap
SPI1 2 datasets
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 164 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 115 bp overlap
TAF1 1 dataset
ChIP Ishikawa ENCSR000BTO.TAF1.Ishikawa 82 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 90 bp overlap
TEAD4 2 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 171 bp overlap
ChIP A549 ENCFF243FTL 171 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 164 bp overlap
TRIM24 2 datasets
ChIP LNCaP_DHT GSE69331.TRIM24.LNCaP_DHT 171 bp overlap
ChIP LNCaP_ETOH GSE69331.TRIM24.LNCaP_ETOH 139 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 128 bp overlap
USF1 1 dataset
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 104 bp overlap
WIZ 1 dataset
ChIP HepG2 ENCFF559CYZ 171 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 171 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 154 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 155 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 156 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 138 bp overlap
ZNF12 1 dataset
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 113 bp overlap
ZNF143 2 datasets
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 171 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 171 bp overlap
ZNF217 1 dataset
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 171 bp overlap
ZNF232 2 datasets
ChIP Hep-G2 ENCSR837GLU.ZNF232.Hep-G2 160 bp overlap
ChIP HepG2 ENCFF905UTT 171 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 171 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 171 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 171 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 158 bp overlap
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