chr9 : 74,493,536 74,493,865
329 bp 80 TFs 2 linked genes
This 329 bp open chromatin element is linked to RORB and RORB-AS1 and is bound by 80 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RORB 3.5 kb Proximal Proximity
RORB-AS1 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:74,488,536 – 74,498,865
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 204 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 257 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 211 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 278 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 318 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 329 bp overlap
ChIP H1 ENCFF126NLU 228 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 104 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 231 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 301 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 329 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 205 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 132 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 320 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 56 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 289 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 180 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF5 1 dataset
Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap
IRF6 1 dataset
Motif DE_12h DE_12h-IRF6_MA1509.1 9 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 259 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 258 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 329 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 329 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 329 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 238 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 329 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 329 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 329 bp overlap
ChIP hESC GSE20650.NANOG.hESC 298 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 237 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 256 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 294 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 6 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 298 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 329 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 208 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 267 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 253 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RFX7 1 dataset
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 253 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 230 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 188 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 182 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 164 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 183 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 329 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 222 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 194 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 329 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 303 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 160 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 133 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 314 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 292 bp overlap
ChIP H1 ENCFF778PAX 62 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 249 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 195 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 243 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 240 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 262 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap