chr9 : 32,553,175 – 32,553,449
274 bp 65 TFs 3 linked genes
This 274 bp open chromatin element is linked to TOPORS, ENSG00000288684, and SMIM27 and is bound by 65 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TOPORS 589 bp At TSS Proximity
ENSG00000288684 607 bp At TSS Proximity
SMIM27 849 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:32,548,175 – 32,558,449
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 142 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 50 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF521IZR 274 bp overlap
ChIP K562 ENCFF923NJI 274 bp overlap
CTCF 1 dataset
ChIP B cell ENCFF500PZO 127 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 229 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000BLI.E2F6.K-562 142 bp overlap
ChIP K562 ENCFF136LTS 122 bp overlap
EOMES 5 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
FEZF2 6 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 274 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 96 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 86 bp overlap
ChIP erythroblast ENCFF867JAR 51 bp overlap
GATA6 1 dataset
ChIP OACP4-C GSE132680.GATA6.OACP4-C 137 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 139 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 218 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 274 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 274 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 274 bp overlap
L3MBTL2 3 datasets
ChIP HEK293T ENCFF482NJV 274 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 274 bp overlap
ChIP K562 ENCFF320EQC 263 bp overlap
MAFK 4 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif DE_24h DE_24h-MAFK_MA0496.4 10 bp overlap
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 274 bp overlap
ChIP K562 ENCFF524IJO 188 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 152 bp overlap
ChIP SK-N-SH ENCFF285LXR 274 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 178 bp overlap
MGA 8 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
ChIP K-562 ENCSR710WLO.MGA.K-562 174 bp overlap
ChIP K562 ENCFF140CEX 274 bp overlap
ChIP K562 ENCFF140CEX 185 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 274 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 226 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 90 bp overlap
NELFA 1 dataset
ChIP K-562_HS GSE112379.NELFA.K-562_HS 269 bp overlap
OSR1 4 datasets
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
Motif DE_24h DE_24h-OSR1_MA1542.2 8 bp overlap
Motif DE_48h DE_48h-OSR1_MA1542.2 8 bp overlap
Motif DE_60h DE_60h-OSR1_MA1542.2 8 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 274 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 274 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 132 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF833NJP 274 bp overlap
ChIP K562 ENCFF836GHX 274 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 105 bp overlap
PROX1 1 dataset
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 274 bp overlap
SMARCA4 1 dataset
ChIP K562 ENCFF357NOJ 90 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 274 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 239 bp overlap
TBR1 5 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX18 5 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 5 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 5 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 5 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 5 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_48h DE_48h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
Tbx6 5 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 237 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 264 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 274 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 274 bp overlap
ZKSCAN1 1 dataset
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF135 4 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 274 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 274 bp overlap
ZNF213 3 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 256 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 274 bp overlap
ZNF362 3 datasets
ChIP HEK293 ENCFF436CGE 274 bp overlap
ChIP HEK293 ENCFF436CGE 182 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 274 bp overlap
ZNF384 3 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ChIP HEK293T ENCFF019DZX 223 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 84 bp overlap
ZNF460 9 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 214 bp overlap
ZNF770 4 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
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