chr9 : 14,420,358 14,420,982
624 bp 115 TFs 0 linked genes
This 624 bp open chromatin element has no linked target genes and is bound by 115 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:14,415,358 – 14,425,982
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_24h DE_24h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_24h DE_24h-ARGFX_MA1463.2 8 bp overlap
ATF6 1 dataset
Motif DE_36h DE_36h-ATF6_MA1466.2 13 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 288 bp overlap
Arx 1 dataset
Motif DE_24h DE_24h-Arx_MA0874.2 10 bp overlap
BARX2 1 dataset
Motif DE_24h DE_24h-BARX2_MA1471.2 9 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 131 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 207 bp overlap
CEBPA 2 datasets
Motif DE_24h DE_24h-CEBPA_MA0102.5 10 bp overlap
Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap
CREB3 1 dataset
Motif DE_36h DE_36h-CREB3_MA0638.2 12 bp overlap
CREB3L1 1 dataset
Motif DE_36h DE_36h-CREB3L1_MA0839.2 13 bp overlap
DBP 1 dataset
Motif DE_24h DE_24h-DBP_MA0639.2 10 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 143 bp overlap
DRGX 1 dataset
Motif DE_24h DE_24h-DRGX_MA1481.2 6 bp overlap
E2F6 1 dataset
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
EMX1 1 dataset
Motif DE_24h DE_24h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_24h DE_24h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_24h DE_24h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_24h DE_24h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 504 bp overlap
ESX1 1 dataset
Motif DE_24h DE_24h-ESX1_MA0644.3 7 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 298 bp overlap
EVX1 1 dataset
Motif DE_24h DE_24h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_24h DE_24h-EVX2_MA0888.2 6 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 624 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 281 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 624 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 624 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 624 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 624 bp overlap
GBX1 1 dataset
Motif DE_24h DE_24h-GBX1_MA0889.2 7 bp overlap
GSX1 1 dataset
Motif DE_24h DE_24h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_24h DE_24h-GSX2_MA0893.3 7 bp overlap
HLF 1 dataset
Motif DE_24h DE_24h-HLF_MA0043.4 9 bp overlap
HOXA1 1 dataset
Motif DE_24h DE_24h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_24h DE_24h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_24h DE_24h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif DE_24h DE_24h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_24h DE_24h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_24h DE_24h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_24h DE_24h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_24h DE_24h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_24h DE_24h-HOXD3_MA0912.2 8 bp overlap
HSF1 2 datasets
Motif DE_24h DE_24h-HSF1_MA0486.2 13 bp overlap
Motif DE_36h DE_36h-HSF1_MA0486.2 13 bp overlap
HSF4 2 datasets
Motif DE_24h DE_24h-HSF4_MA0771.1 13 bp overlap
Motif DE_36h DE_36h-HSF4_MA0771.1 13 bp overlap
IKZF2 3 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 313 bp overlap
IRF6 2 datasets
Motif DE_24h DE_24h-IRF6_MA1509.1 9 bp overlap
Motif DE_36h DE_36h-IRF6_MA1509.1 9 bp overlap
ISX 1 dataset
Motif DE_24h DE_24h-ISX_MA0654.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 337 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 497 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 520 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 447 bp overlap
LBX1 1 dataset
Motif DE_24h DE_24h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_24h DE_24h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_24h DE_24h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_24h DE_24h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_24h DE_24h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_24h DE_24h-LMX1B_MA0703.3 8 bp overlap
Lhx4 1 dataset
Motif DE_24h DE_24h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_24h DE_24h-Lhx8_MA0705.2 6 bp overlap
MEIS1 4 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA1639.2 9 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
MEIS3 2 datasets
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
Motif DE_36h DE_36h-MEIS3_MA0775.2 7 bp overlap
MEOX1 1 dataset
Motif DE_24h DE_24h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_24h DE_24h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_24h DE_24h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_24h DE_24h-MNX1_MA0707.3 6 bp overlap
MYBL2 1 dataset
Motif DE_24h DE_24h-MYBL2_MA0777.1 15 bp overlap
NFIL3 1 dataset
Motif DE_24h DE_24h-NFIL3_MA0025.3 9 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
NKX6-2 1 dataset
Motif DE_24h DE_24h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_24h DE_24h-NOTO_MA0710.2 7 bp overlap
NR1D1 1 dataset
Motif DE_36h DE_36h-NR1D1_MA1531.2 14 bp overlap
NUTM1 2 datasets
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 352 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 303 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
ONECUT3 1 dataset
Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap
PBX1 2 datasets
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
PDX1 1 dataset
Motif DE_24h DE_24h-PDX1_MA0132.3 6 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 297 bp overlap
Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 258 bp overlap
POU4F2 1 dataset
Motif DE_24h DE_24h-POU4F2_MA0683.2 15 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA0628.2 6 bp overlap
PROP1 1 dataset
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_24h DE_24h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_24h DE_24h-PRRX2_MA0075.4 7 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 248 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 391 bp overlap
RAX2 1 dataset
Motif DE_24h DE_24h-RAX2_MA0717.2 6 bp overlap
SHOX 1 dataset
Motif DE_24h DE_24h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 547 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 511 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 490 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 535 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 619 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 585 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 132 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 485 bp overlap
SPIB 2 datasets
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Shox2 1 dataset
Motif DE_24h DE_24h-Shox2_MA0720.2 6 bp overlap
Spi1 2 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 349 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 219 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 314 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 314 bp overlap
TEF 1 dataset
Motif DE_24h DE_24h-TEF_MA0843.2 10 bp overlap
TLX2 1 dataset
Motif DE_24h DE_24h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_24h DE_24h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_24h DE_24h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_24h DE_24h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_24h DE_24h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_24h DE_24h-VSX2_MA0726.2 7 bp overlap
XBP1 1 dataset
Motif DE_36h DE_36h-XBP1_MA0844.2 11 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 121 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 204 bp overlap
ZNF35 1 dataset
Motif DE_24h DE_24h-ZNF35_MA2333.1 7 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 276 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 296 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
mix-a 1 dataset
Motif DE_24h DE_24h-mix-a_MA0621.2 7 bp overlap