chr9 : 8,864,280 8,864,772
492 bp 88 TFs 2 linked genes
This 492 bp open chromatin element is linked to PTPRD-AS1 and PTPRD and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PTPRD-AS1 6.2 kb Proximal Proximity
PTPRD 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:8,859,280 – 8,869,772
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 157 bp overlap
BRD4 1 dataset
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 51 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPB 1 dataset
ChIP A549 ENCFF797MXZ 159 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 492 bp overlap
CTCF 5 datasets
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 378 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 166 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 282 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 281 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 167 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 173 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 113 bp overlap
FOS 2 datasets
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 165 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 4 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 261 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 260 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 188 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 160 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 166 bp overlap
GATA2 6 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
ChIP ESF GSE108408.GATA2.ESF 180 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 149 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 92 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 163 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 164 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 193 bp overlap
ChIP DE DE-GATA4-2 204 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 79 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 79 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 153 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 70 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 235 bp overlap
ChIP DE DE-GATA6-2 291 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 442 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 351 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 317 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 193 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 477 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 241 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 92 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 275 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 318 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 324 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 336 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 131 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 174 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 359 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 196 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 242 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 285 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 200 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 115 bp overlap
NKX6-1 2 datasets
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 176 bp overlap
PAX6 1 dataset
Motif DE_12h DE_12h-PAX6_MA0069.1 14 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 143 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 182 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 250 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 195 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 207 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 221 bp overlap
RELA 6 datasets
ChIP 786-O GSE109953.RELA.786-O 318 bp overlap
ChIP 786-O GSE86092.RELA.786-O 101 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 97 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 181 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 315 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 335 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 406 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 376 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 294 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 352 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 321 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 221 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 188 bp overlap
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 210 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 492 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 168 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 147 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 395 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 492 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 492 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 492 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 275 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 101 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 130 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 214 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 168 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 188 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 220 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_6aa GSE139053.SS18-SSX.fibroblast_6aa 180 bp overlap
STAG2 1 dataset
ChIP MCF-10A GSE101921.STAG2.MCF-10A 160 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 168 bp overlap
TP53 1 dataset
ChIP SaOS-2 ERP002038.TP53.SaOS-2 90 bp overlap
TP63 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 191 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 54 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 133 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap