chr9 : 8,560,574 – 8,561,603
1,029 bp 70 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 70 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:8,555,574 – 8,566,603
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 4 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 177 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 138 bp overlap
ChIP fibroblast_prostate-cancer_PCDF2 GSE126852.AR.fibroblast_prostate-cancer_PCDF2 193 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 162 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 460 bp overlap
ATF4 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 184 bp overlap
BRD4 10 datasets
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 252 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 380 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 572 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 384 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 443 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 477 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 478 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 450 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 222 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 337 bp overlap
CDX2 3 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 221 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 416 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 361 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 185 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 139 bp overlap
CREBBP 1 dataset
ChIP LS180 GSE39277.CREBBP.LS180 182 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 220 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 212 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 204 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 476 bp overlap
FOXA1 15 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 367 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 154 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 419 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 322 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 376 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 265 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 214 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 554 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 267 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 458 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 467 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 361 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 343 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 150 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 408 bp overlap
FOXA2 9 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 274 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 392 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 392 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 338 bp overlap
ChIP DE DE-FOXA2-1 657 bp overlap
ChIP DE DE-FOXA2-2 581 bp overlap
ChIP PC-3_GSK GSE148982.FOXA2.PC-3_GSK 319 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 347 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 398 bp overlap
FOXF1 2 datasets
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 287 bp overlap
ChIP GIST48 GSE106624.FOXF1.GIST48 415 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 304 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 349 bp overlap
ChIP DE DE-GATA4-2 400 bp overlap
GATA6 7 datasets
ChIP AGS GSE51705.GATA6.AGS 191 bp overlap
ChIP DE DE-GATA6-1 364 bp overlap
ChIP DE DE-GATA6-2 394 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 818 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 911 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 237 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 625 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 203 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 183 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
HOXB13 1 dataset
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 200 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 302 bp overlap
IRF2BP2 1 dataset
ChIP HEK293 GSE124636.IRF2BP2.HEK293 321 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 324 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 258 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 209 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 333 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 174 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 345 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 273 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 170 bp overlap
KLF5 1 dataset
ChIP AGS GSE51705.KLF5.AGS 172 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 172 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 303 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 291 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 336 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 262 bp overlap
ChIP hESC GSE18292.NANOG.hESC 110 bp overlap
NCOR1 2 datasets
ChIP LS180 GSE39277.NCOR1.LS180 260 bp overlap
ChIP LS180_125 GSE39277.NCOR1.LS180_125 146 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 169 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 381 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 320 bp overlap
NUP98-HOXA9 1 dataset
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 170 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 187 bp overlap
PGR_A 1 dataset
ChIP hESC GSE62475.PGR_A.hESC 268 bp overlap
PGR_B 1 dataset
ChIP hESC GSE62475.PGR_B.hESC 258 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 147 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 249 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 284 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 240 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 275 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 211 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 869 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 676 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 448 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 534 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 629 bp overlap
SMAD3 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 187 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 174 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 122 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 267 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 431 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 184 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 362 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 490 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 194 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 470 bp overlap
SOX2 3 datasets
ChIP LK2 GSE137459.SOX2.LK2 428 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 301 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 506 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 187 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 195 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 144 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 172 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 208 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 210 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 181 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 188 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 322 bp overlap
ZNF585B 1 dataset
ChIP HEK293 ENCSR011XCI.ZNF585B.HEK293 200 bp overlap
ZNF680 3 datasets
ChIP HEK293 ENCFF418WHE 329 bp overlap
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 293 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 203 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 236 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 232 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 221 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 144 bp overlap
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