chr1 : 167,770,222 – 167,770,736

514 bp 77 TFs 0 linked genes

This 514 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

77 transcription factors

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 113 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 182 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 173 bp overlap

BRD4 1 dataset

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 160 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 258 bp overlap

CTCF 1 dataset

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 223 bp overlap

Crx 1 dataset

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

DUX4 1 dataset

Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap

EBF1 1 dataset

ChIP NALM-6 GSE126300.EBF1.NALM-6 242 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 356 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 180 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap

FIGLA 1 dataset

Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 514 bp overlap

ChIP DE DE-FOXA2-2 508 bp overlap

GATA2 1 dataset

ChIP TF1 GSE73207.GATA2.TF1 336 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 514 bp overlap

ChIP DE DE-GATA4-2 514 bp overlap

ChIP foregut GSE117136.GATA4.foregut 446 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 335 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 514 bp overlap

ChIP DE DE-GATA6-2 514 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 486 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 438 bp overlap

ChIP foregut GSE117136.GATA6.foregut 459 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 251 bp overlap

GSC 1 dataset

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

HDAC2 1 dataset

ChIP K-562 ENCSR000BMG.HDAC2.K-562 122 bp overlap

HIF1A 2 datasets

ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 195 bp overlap

ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 273 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 317 bp overlap

JUND 1 dataset

ChIP WA01 ENCSR000BKP.JUND.WA01 113 bp overlap

KLF14 1 dataset

Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap

KLF5 1 dataset

Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap

MAZ 1 dataset

Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap

MEIS1 1 dataset

Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap

MGA 1 dataset

Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap

NANOG 9 datasets

ChIP H1 ENCFF747ZPQ 187 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 293 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 179 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 229 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 353 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 208 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 155 bp overlap

ChIP hESC GSE20650.NANOG.hESC 210 bp overlap

ChIP hESC GSE18292.NANOG.hESC 134 bp overlap

NCOA1 1 dataset

ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 195 bp overlap

NFATC3 1 dataset

Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap

NFIA 1 dataset

ChIP K-562 GSE97661.NFIA.K-562 236 bp overlap

NFIB 1 dataset

Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap

NFIC 3 datasets

Motif DE_72h DE_72h-NFIC_MA1527.2 15 bp overlap

ChIP K-562 ENCSR796ITY.NFIC.K-562 392 bp overlap

ChIP K562 ENCFF167YID 310 bp overlap

NFIC::TLX1 1 dataset

Motif DE_72h DE_72h-NFICTLX1_MA0119.1 14 bp overlap

NFIX 1 dataset

Motif DE_72h DE_72h-NFIX_MA1528.2 14 bp overlap

Nfatc1 1 dataset

Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 1 dataset

Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap

OTX1 1 dataset

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

PITX1 1 dataset

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF833NJP 214 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 183 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 319 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 323 bp overlap

PRDM14 4 datasets

ChIP NCCIT GSE71675.PRDM14.NCCIT 272 bp overlap

ChIP hESC GSE22767.PRDM14.hESC 335 bp overlap

ChIP hESC GSE138674.PRDM14.hESC 330 bp overlap

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 350 bp overlap

RAD21 1 dataset

ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 167 bp overlap

REST 1 dataset

ChIP WA01 ENCSR000BHM.REST.WA01 57 bp overlap

RHOXF1 1 dataset

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

RUNX1 1 dataset

ChIP NALM-6 GSE126300.RUNX1.NALM-6 450 bp overlap

RXRA 1 dataset

ChIP WA01 ENCSR000BJW.RXRA.WA01 124 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 483 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 214 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 156 bp overlap

SMC1A 1 dataset

ChIP MCF-7 GSE115602.SMC1A.MCF-7 147 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 231 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 317 bp overlap

SOX2 3 datasets

ChIP H9 GSE46837.SOX2.H9 216 bp overlap

ChIP hESC GSE18292.SOX2.hESC 91 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 221 bp overlap

SOX8 1 dataset

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 257 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap

SP4 1 dataset

Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

SP8 1 dataset

Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap

Spz1 1 dataset

Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap

TBX1 1 dataset

Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap

TBX4 1 dataset

Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 224 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 226 bp overlap

TCF4 1 dataset

Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap

ZBTB6 1 dataset

ChIP HEK293 GSE76494.ZBTB6.HEK293 177 bp overlap

ZEB1 1 dataset

Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap

ZFP14 1 dataset

Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap

ZNF148 1 dataset

Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap

ZNF257 1 dataset

Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap

ZNF281 1 dataset

Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap

ZNF652 1 dataset

Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap

ZNF740 1 dataset

Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap

ZNF766 1 dataset

Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap