chr8 : 71,845,521 71,845,995
474 bp 69 TFs 2 linked genes
This 474 bp open chromatin element is linked to MSC and MSC-AS1 and is bound by 69 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MSC 1.1 kb Proximal Proximity
MSC-AS1 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:71,840,521 – 71,850,995
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 3 datasets
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 137 bp overlap
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 193 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 404 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 245 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 80 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 474 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 106 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCFF521IZR 405 bp overlap
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 65 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 316 bp overlap
BRD4 4 datasets
ChIP RH4 GSE83726.BRD4.RH4 474 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 469 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 288 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 316 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 154 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 274 bp overlap
CEBPB 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 131 bp overlap
CHD2 1 dataset
ChIP GM12878 ENCFF697XCL 59 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 74 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 391 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 239 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 238 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 304 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 381 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 362 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 162 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 244 bp overlap
EZH2 16 datasets
ChIP GM23338 ENCFF613YON 300 bp overlap
ChIP H1 ENCFF232NZA 474 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 268 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 236 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 100 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 429 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 474 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 458 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 474 bp overlap
ChIP hepatocyte ENCFF552DZB 138 bp overlap
ChIP hepatocyte ENCFF552DZB 426 bp overlap
ChIP hepatocyte ENCFF552DZB 243 bp overlap
ChIP keratinocyte ENCFF070STK 435 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 267 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 227 bp overlap
ChIP neural progenitor cell ENCFF472NFV 474 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 213 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 172 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 325 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 301 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 458 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 202 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 474 bp overlap
JARID2 6 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 362 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 296 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 474 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 474 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 349 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 474 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 254 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 394 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 391 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 474 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 198 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 470 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 141 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 474 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 121 bp overlap
MED1 2 datasets
ChIP GM12878 GSE93080.MED1.GM12878 73 bp overlap
ChIP RH4 GSE83726.MED1.RH4 417 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 474 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 290 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 57 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 293 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 474 bp overlap
MYOD1 8 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 243 bp overlap
ChIP RD GSE137168.MYOD1.RD 312 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 295 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 474 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 474 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 364 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 254 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 265 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 362 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 317 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 172 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 246 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 265 bp overlap
POLR2A 12 datasets
ChIP GM12878 ENCFF263VRI 301 bp overlap
ChIP GM12878 ENCFF263VRI 394 bp overlap
ChIP GM12878 ENCFF412KAE 160 bp overlap
ChIP GM12878 ENCFF521FXC 281 bp overlap
ChIP GM12892 ENCFF542ZFO 429 bp overlap
ChIP GM18951 ENCFF079KKO 258 bp overlap
ChIP GM19099 ENCFF726IBN 440 bp overlap
ChIP GM19193 ENCFF599VTO 262 bp overlap
ChIP GM19193 ENCFF599VTO 452 bp overlap
ChIP IMR-90 ENCFF672YWV 386 bp overlap
ChIP IMR-90 ENCFF672YWV 474 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 309 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 156 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 402 bp overlap
RAD21 2 datasets
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 240 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 462 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 322 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 192 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 290 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 184 bp overlap
RNF2 7 datasets
ChIP H1 ENCFF239FFS 315 bp overlap
ChIP H1 ENCFF239FFS 283 bp overlap
ChIP H1 ENCFF239FFS 262 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 126 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 183 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 130 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 193 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 196 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 314 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 300 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 355 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 96 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 257 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 137 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 316 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 270 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 379 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 474 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 243 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 319 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 117 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 191 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCFF818EFA 302 bp overlap
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 357 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 249 bp overlap
ZNF429 1 dataset
ChIP HEK293T GSE78099.ZNF429.HEK293T 166 bp overlap
ZNF687 3 datasets
ChIP GM12878 ENCFF233SGE 412 bp overlap
ChIP GM12878 ENCFF233SGE 315 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 234 bp overlap