chr7 : 42,222,264 42,222,533
269 bp 86 TFs 1 linked gene
This 269 bp open chromatin element is linked to GLI3 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GLI3 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:42,217,264 – 42,227,533
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 269 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 103 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 214 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 123 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 155 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 269 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 230 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 233 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 269 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 51 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 208 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK1 1 dataset
Motif DE_12h DE_12h-ELK1_MA0028.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 269 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 244 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ERG 2 datasets
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 210 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 63 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 143 bp overlap
ETS1 3 datasets
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ChIP GM23338 ENCFF701IZH 269 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 215 bp overlap
ETS2 1 dataset
Motif DE_12h DE_12h-ETS2_MA1484.2 9 bp overlap
ETV1 3 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 202 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 150 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
ETV3 1 dataset
Motif DE_12h DE_12h-ETV3_MA0763.2 9 bp overlap
ETV4 1 dataset
Motif DE_12h DE_12h-ETV4_MA0764.4 9 bp overlap
ETV6 1 dataset
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FEV 1 dataset
Motif DE_12h DE_12h-FEV_MA0156.4 9 bp overlap
FLI1 9 datasets
ChIP A-673 GSE99959.FLI1.A-673 269 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 269 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 269 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 250 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 269 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 269 bp overlap
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 269 bp overlap
ChIP SK-N-MC_SHGFP_48H GSE61944.FLI1.SK-N-MC_SHGFP_48H 207 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 157 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 269 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 263 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 205 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 228 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 265 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 269 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 252 bp overlap
ChIP H1 ENCFF747ZPQ 229 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 269 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 269 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 226 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 269 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 269 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 269 bp overlap
ChIP hESC GSE20650.NANOG.hESC 197 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PGR 1 dataset
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 213 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 5 datasets
ChIP GM23338 ENCFF333SNB 238 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 269 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 185 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 269 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 174 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 269 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 269 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 269 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 200 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 269 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 269 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 269 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 234 bp overlap
SMARCC1 5 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 203 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 222 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 182 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 249 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 269 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 177 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 269 bp overlap
ChIP hESC GSE69479.SOX2.hESC 217 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 269 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 241 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 256 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 269 bp overlap
SPI1 2 datasets
ChIP K-562 GSE70482.SPI1.K-562 162 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 130 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 191 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 187 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 181 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 134 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 134 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 141 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 171 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 155 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 160 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 152 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 252 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 269 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 251 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 203 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 102 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 235 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 185 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 155 bp overlap
Zbtb2 1 dataset
Motif DE_12h DE_12h-Zbtb2_MA2340.1 10 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap