chr6 : 158,878,392 158,879,559
1,167 bp 84 TFs 5 linked genes
This 1.2 kb open chromatin element is linked to 5 target genes and is bound by 84 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
LINC02901 8.5 kb Proximal Proximity
EZR 59.5 kb Distal Multiome
TAGAP-AS1 121.1 kb Distal Multiome
RSPH3 121.4 kb Distal Multiome
DYNLT1 234.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:158,873,392 – 158,884,559
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 278 bp overlap
Arid3a 2 datasets
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Atoh1 1 dataset
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 169 bp overlap
BATF3 1 dataset
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 389 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 116 bp overlap
BRD4 4 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 207 bp overlap
ChIP HEK293T GSE51633.BRD4.HEK293T 191 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 299 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 189 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 280 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 325 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCFF542UDC 465 bp overlap
CC2D1A 1 dataset
ChIP K562 ENCFF567XUT 321 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 245 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 316 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 152 bp overlap
CTCF 1 dataset
ChIP K562 ENCFF598YSU 271 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 270 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 155 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 162 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 297 bp overlap
ChIP K562 ENCFF455MKD 205 bp overlap
FOXA1 1 dataset
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 438 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 111 bp overlap
ChIP DE DE-FOXA2-1 697 bp overlap
ChIP DE DE-FOXA2-2 686 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 343 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 176 bp overlap
GATA2 1 dataset
ChIP WA09 GSE105081.GATA2.WA09 280 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 425 bp overlap
ChIP DE DE-GATA4-2 546 bp overlap
ChIP foregut GSE117136.GATA4.foregut 515 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 545 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 524 bp overlap
GATA6 15 datasets
ChIP AGS GSE51705.GATA6.AGS 132 bp overlap
ChIP DE DE-GATA6-1 478 bp overlap
ChIP DE DE-GATA6-2 858 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 327 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 636 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 405 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 561 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 532 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 284 bp overlap
ChIP foregut GSE117136.GATA6.foregut 456 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 354 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 329 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 434 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 333 bp overlap
GFI1 1 dataset
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HDAC1 2 datasets
ChIP K562 ENCFF968WBH 330 bp overlap
ChIP K562 ENCFF968WBH 128 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 255 bp overlap
HOXA10 1 dataset
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF918AID 485 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 225 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 256 bp overlap
IRF4 5 datasets
ChIP B-cell GSE142493.IRF4.B-cell 414 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 242 bp overlap
ChIP KK-1 GSE94732.IRF4.KK-1 84 bp overlap
ChIP KK-1 GSE94732.IRF4.KK-1 238 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 458 bp overlap
Isl1 1 dataset
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 247 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 279 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 531 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 349 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 280 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 433 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF133OLU 290 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 322 bp overlap
Lhx3 1 dataset
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
MAFF 1 dataset
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 404 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 107 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 146 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
Mafb 1 dataset
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 662 bp overlap
ChIP hESC GSE18292.NANOG.hESC 154 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 505 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 275 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 175 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 103 bp overlap
NFYB 5 datasets
ChIP GM12878 ENCFF474DNH 350 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 252 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 205 bp overlap
ChIP K562 ENCFF709RXX 317 bp overlap
ChIP WTC11 ENCFF751ZTQ 358 bp overlap
NKX6-3 1 dataset
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 265 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 285 bp overlap
ChIP K562 ENCFF236IUS 167 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 145 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 654 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 443 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 247 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 347 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 375 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 647 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 400 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 400 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 388 bp overlap
SMAD3 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 419 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 167 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 768 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 472 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 244 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 377 bp overlap
STAT5B 1 dataset
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 204 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 546 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 530 bp overlap
TFAP4 2 datasets
Motif DE_48h DE_48h-TFAP4_MA1570.1 10 bp overlap
ChIP K562 ENCFF727PXG 347 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF616RIL 327 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 318 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 312 bp overlap
VDR 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 282 bp overlap
VENTX 1 dataset
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 304 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 326 bp overlap
ChIP K562 ENCFF875HLX 209 bp overlap
ZNF318 1 dataset
ChIP K562 ENCFF592QGS 326 bp overlap
ZNF507 1 dataset
ChIP K562 ENCFF235JOG 102 bp overlap