chr1 : 110,173,515 110,173,893
378 bp 104 TFs 0 linked genes
This 378 bp open chromatin element has no linked target genes and is bound by 104 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:110,168,515 – 110,178,893
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 1 dataset
ChIP endometrial-stromal-cell GSE119432.AR.endometrial-stromal-cell 199 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 198 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 293 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 121 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 247 bp overlap
CTCF 40 datasets
ChIP AG04449 ENCFF248MBD 170 bp overlap
ChIP AG04450 ENCFF116DJL 228 bp overlap
ChIP AG09309 ENCFF478XPS 234 bp overlap
ChIP AG10803 ENCFF549AQK 233 bp overlap
ChIP BE2C ENCFF757SRF 207 bp overlap
ChIP BJ ENCFF434HEC 233 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 212 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF832KWE 356 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 241 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 58 bp overlap
ChIP HFFc6 ENCFF005CJI 378 bp overlap
ChIP IMR-90 ENCFF887MRH 230 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 132 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 263 bp overlap
ChIP IMR-90_siRNA GSE125639.CTCF.IMR-90_siRNA 200 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 321 bp overlap
ChIP chondrocyte ENCFF134ORZ 210 bp overlap
ChIP endodermal cell ENCFF471YCZ 209 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 182 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 260 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 149 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 176 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 227 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 156 bp overlap
ChIP osteocyte ENCFF929FPD 320 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 176 bp overlap
ChIP smooth muscle cell ENCFF656FBT 302 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 248 bp overlap
ChIP thyroid gland ENCFF163TUI 298 bp overlap
ChIP thyroid gland ENCFF204HWS 262 bp overlap
ChIP thyroid gland ENCFF300RYK 336 bp overlap
ChIP thyroid gland ENCFF631QRY 294 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 242 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 209 bp overlap
ChIP thyroid-gland ENCSR505ZGX.CTCF.thyroid-gland 174 bp overlap
ChIP thyroid-gland ENCSR744YJR.CTCF.thyroid-gland 139 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 281 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 203 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 168 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 76 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 378 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 114 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 315 bp overlap
FOXA1 1 dataset
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-2 232 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 2 datasets
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
ChIP SK-N-MC ENCFF865YOS 217 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
ChIP Hep-G2 ENCSR000BJK.GABPA.Hep-G2 61 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 96 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 76 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 378 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 283 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 288 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 345 bp overlap
ChIP hESC GSE18292.NANOG.hESC 141 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 257 bp overlap
NR3C1 3 datasets
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 111 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 73 bp overlap
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 166 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 167 bp overlap
PAX2 1 dataset
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
PGR 1 dataset
ChIP hESC GSE69539.PGR.hESC 220 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 375 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 314 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 344 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 378 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RELA 1 dataset
ChIP HeLa-B2_GRKD_DMSO GSE24518.RELA.HeLa-B2_GRKD_DMSO 55 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 239 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 99 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 305 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 357 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 378 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 378 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 378 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 378 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 276 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 335 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 378 bp overlap
SMARCA4 2 datasets
ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 261 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 270 bp overlap
SMARCC1 5 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 183 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 367 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 217 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 287 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 309 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 84 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 170 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap