chr6 : 36,368,910 36,369,452
542 bp 68 TFs 5 linked genes
This 542 bp open chromatin element is linked to 5 target genes and is bound by 68 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
KCTD20 73.8 kb Distal Multiome
BRPF3 171.7 kb Distal Multiome
BRPF3-AS1 172.0 kb Distal Multiome
STK38 178.3 kb Distal Multiome
SRSF3 225.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:36,363,910 – 36,374,452
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ARID1A 2 datasets
ChIP H9 GSE139260.ARID1A.H9 118 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 493 bp overlap
ASCL1 5 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 155 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 189 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 255 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 256 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 147 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 542 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 373 bp overlap
BRD2 2 datasets
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 187 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 116 bp overlap
BRD4 6 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 463 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 362 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 367 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 542 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 226 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 480 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 73 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 150 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 63 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 291 bp overlap
CTCF 20 datasets
ChIP D721Med ENCFF513FYD 211 bp overlap
ChIP HL-60 ERP008568.CTCF.HL-60 542 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 197 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 174 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 154 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 136 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 366 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 136 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 335 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 163 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 160 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 267 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 193 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 194 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 267 bp overlap
ChIP gastrocnemius-medialis ENCSR071XWO.CTCF.gastrocnemius-medialis 306 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 287 bp overlap
ChIP BLaER1 ENCFF364PUR 139 bp overlap
ChIP BLaER1 ENCFF798NMV 57 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 196 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 349 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 151 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 216 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 150 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 324 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 475 bp overlap
ChIP DE DE-GATA4-2 542 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 491 bp overlap
ChIP DE DE-GATA6-2 514 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 341 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 496 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 339 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 443 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 542 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 397 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 542 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 205 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 286 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 405 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 331 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 134 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 278 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 192 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 442 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 279 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 334 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 286 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 208 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 270 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 239 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 361 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 277 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 287 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 349 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 290 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 230 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 253 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 216 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 359 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 183 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 114 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 198 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 159 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 352 bp overlap
RAD21 4 datasets
ChIP K-562 ENCSR000BKV.RAD21.K-562 131 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP K562 ENCFF634XYR 336 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 301 bp overlap
RB1 1 dataset
ChIP K-562 ENCSR670JDQ.RB1.K-562 198 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 274 bp overlap
RCOR1 1 dataset
ChIP AML GSE112074.RCOR1.AML 85 bp overlap
REST 3 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 209 bp overlap
ChIP K562 ENCFF688UKW 367 bp overlap
ChIP neural ENCSR000BTV.REST.neural 283 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 148 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 202 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 231 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 281 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 542 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 521 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 404 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 394 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 499 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 303 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 542 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 486 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 313 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 301 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 450 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 529 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 370 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 300 bp overlap
SRSF3 1 dataset
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 211 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 190 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 217 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 138 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 453 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 137 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 74 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 122 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 226 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 358 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 72 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 393 bp overlap