chr6 : 13,532,018 13,532,632
614 bp 66 TFs 5 linked genes
This 614 bp open chromatin element is linked to 5 target genes and is bound by 66 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
SIRT5 42.3 kb Distal Multiome
NOL7 83.1 kb Distal Multiome
RANBP9 179.6 kb Distal Multiome
TBC1D7 203.7 kb Distal Multiome
MCUR1 282.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:13,527,018 – 13,537,632
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 121 bp overlap
ATF4 1 dataset
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
BRD2 3 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 377 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 382 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 295 bp overlap
BRD4 1 dataset
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 210 bp overlap
CEBPG 1 dataset
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 405 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 402 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 514 bp overlap
CTCF 5 datasets
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 190 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 240 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 122 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 378 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 373 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 200 bp overlap
DUX4 3 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 240 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 447 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
E2F7 1 dataset
Motif DE_48h DE_48h-E2F7_MA0758.1 14 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 271 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 153 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 614 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 225 bp overlap
FOS 1 dataset
Motif DE_48h DE_48h-FOS_MA1951.2 13 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 476 bp overlap
ChIP DE DE-FOXA2-2 408 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 269 bp overlap
GATA2 1 dataset
ChIP WA09 GSE105081.GATA2.WA09 174 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 195 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 207 bp overlap
ChIP DE DE-GATA4-1 543 bp overlap
ChIP DE DE-GATA4-2 598 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 516 bp overlap
ChIP DE DE-GATA6-2 544 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 594 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 602 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 542 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 444 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 573 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 587 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 436 bp overlap
GFI1 1 dataset
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 141 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 130 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 193 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 309 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 232 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 307 bp overlap
MYB 1 dataset
ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 177 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 292 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 273 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 295 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 246 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 164 bp overlap
NR3C1 2 datasets
ChIP NALM-6 GSE67046.NR3C1.NALM-6 408 bp overlap
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 170 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 323 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 425 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 588 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 274 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 429 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 531 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 398 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 373 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 345 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 565 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 352 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 559 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 313 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 415 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 400 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 226 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 239 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 290 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 438 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 205 bp overlap
TEAD4 4 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 342 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 334 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 294 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 199 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 262 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 146 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 499 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 197 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 355 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 261 bp overlap
ZNF16 1 dataset
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 246 bp overlap
ChIP K562 ENCFF615YYW 78 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 157 bp overlap
ZNF418 1 dataset
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 228 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 252 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 199 bp overlap
ZNF85 1 dataset
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Zfp335 1 dataset
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap