chr6 : 1,627,964 1,628,409
445 bp 70 TFs 1 linked gene
This 445 bp open chromatin element is linked to GMDS and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GMDS 3.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:1,622,964 – 1,633,409
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 340 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 188 bp overlap
BRD4 2 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 146 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 244 bp overlap
CBX8 2 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 220 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 113 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 113 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 241 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 252 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 269 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 445 bp overlap
EZH2 3 datasets
ChIP endothelial cell of umbilical vein ENCFF539AKL 232 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 445 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 445 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 434 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 351 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 169 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 224 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 359 bp overlap
ChIP DE DE-FOXA2-2 317 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 199 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 395 bp overlap
ChIP DE DE-GATA4-2 445 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 411 bp overlap
ChIP DE DE-GATA6-2 445 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 445 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 445 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 403 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 445 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 445 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 365 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 294 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 251 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 131 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 211 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 368 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 213 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 342 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 152 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 260 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 130 bp overlap
KMT2A 4 datasets
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 109 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 445 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 319 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 240 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 181 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 265 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 379 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 247 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 441 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 81 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 253 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 116 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 402 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 386 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 439 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 402 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 119 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 129 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 168 bp overlap
RNF2 5 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 266 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 119 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 289 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 289 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 129 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 131 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 219 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 155 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 116 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 405 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 445 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 378 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 444 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 445 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 351 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 160 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 127 bp overlap
SMARCA4 4 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 445 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 142 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 156 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 59 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 445 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 293 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 373 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 352 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 445 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 212 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 158 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 175 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 289 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 178 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 153 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 154 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 225 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 445 bp overlap
YY1 5 datasets
ChIP HEK293 ENCFF734SBY 336 bp overlap
ChIP HEK293 ENCSR859RAO.YY1.HEK293 308 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 378 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 445 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 162 bp overlap
YY2 1 dataset
ChIP HEK293 ENCFF997QEP 347 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 145 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 233 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 169 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 445 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 284 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 436 bp overlap
ZFP42 1 dataset
ChIP HEK293 GSE76494.ZFP42.HEK293 168 bp overlap
ZNF133 3 datasets
ChIP HEK293 ENCFF844RST 287 bp overlap
ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 234 bp overlap
ChIP HEK293T GSE78099.ZNF133.HEK293T 445 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 331 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 435 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 308 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 412 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 199 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 270 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 273 bp overlap
ZXDB 3 datasets
ChIP HEK293 ENCFF835SGA 276 bp overlap
ChIP HEK293 ENCFF835SGA 445 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 315 bp overlap