chr5 : 174,726,212 174,726,912
700 bp 73 TFs 1 linked gene
This 700 bp open chromatin element is linked to MSX2 and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MSX2 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:174,721,212 – 174,731,912
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ATF2 5 datasets
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
ChIP HEK293 ENCFF194VKZ 127 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 85 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 63 bp overlap
ChIP HepG2 ENCFF955VER 117 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 154 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 101 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 577 bp overlap
ChIP H1 ENCFF095JHA 403 bp overlap
CDX2 3 datasets
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 202 bp overlap
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
Motif DE_72h DE_72h-CDX2_MA0465.3 8 bp overlap
DPRX 2 datasets
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 252 bp overlap
ESR1 3 datasets
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 193 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 67 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 101 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 296 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 234 bp overlap
EZH2 9 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 447 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 99 bp overlap
ChIP GM23338 ENCFF613YON 591 bp overlap
ChIP GM23338 ENCFF613YON 128 bp overlap
ChIP H1 ENCFF232NZA 700 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 114 bp overlap
ChIP neural cell ENCFF610EPB 256 bp overlap
ChIP neural progenitor cell ENCFF018MKA 439 bp overlap
ChIP neural progenitor cell ENCFF472NFV 700 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 223 bp overlap
FOS::JUN 1 dataset
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 700 bp overlap
ChIP DE DE-FOXA2-2 700 bp overlap
GATA2 2 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 687 bp overlap
ChIP DE DE-GATA4-2 634 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 499 bp overlap
ChIP foregut GSE117136.GATA4.foregut 518 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 591 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 289 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 256 bp overlap
ChIP DE DE-GATA6-1 641 bp overlap
ChIP DE DE-GATA6-2 700 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 608 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 605 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 673 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 576 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 666 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 567 bp overlap
ChIP foregut GSE117136.GATA6.foregut 521 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 403 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 537 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 493 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
HNF4A 3 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 164 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 209 bp overlap
Motif DE_36h DE_36h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_36h DE_36h-HNF4G_MA0484.3 9 bp overlap
JARID2 2 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 131 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 52 bp overlap
JUN 5 datasets
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 306 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 306 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 451 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 486 bp overlap
JUND 1 dataset
ChIP Kasumi-1_RUNX1-KO GSE117105.JUND.Kasumi-1_RUNX1-KO 141 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 300 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 282 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 110 bp overlap
KMT2A 1 dataset
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 338 bp overlap
MEN1 1 dataset
ChIP MCF-7 GSE85317.MEN1.MCF-7 222 bp overlap
Mecom 2 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NR1I3 1 dataset
Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 406 bp overlap
PGR 1 dataset
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 182 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 95 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 149 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 105 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 498 bp overlap
ChIP H1 ENCFF239FFS 206 bp overlap
ChIP H1 ENCFF239FFS 206 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 71 bp overlap
Rarg 1 dataset
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCFF513YVP 167 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 125 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 700 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 700 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 700 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 700 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 700 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 665 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 394 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 430 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 149 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 70 bp overlap
SS18 5 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 293 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 381 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 78 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 53 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 330 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 128 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 434 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 700 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 481 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 309 bp overlap
TEAD1 1 dataset
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 146 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 381 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 258 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 223 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 218 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 198 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCFF009NAJ 483 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 67 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 115 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 82 bp overlap
ZNF213 1 dataset
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 200 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 419 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 381 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 391 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 269 bp overlap
ZNF549 1 dataset
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 553 bp overlap
ZNF768 1 dataset
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
ZSCAN21 2 datasets
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_72h DE_72h-ZSCAN21_MA2336.1 7 bp overlap