chr5 : 135,149,740 135,150,607
867 bp 86 TFs 4 linked genes
This 867 bp open chromatin element is linked to 4 target genes and is bound by 86 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PITX1-AS1 116.9 kb Distal Multiome
PCBD2 245.0 kb Distal Multiome
MACROH2A1 249.1 kb Distal Multiome
TXNDC15 275.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:135,144,740 – 135,155,607
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 103 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 254 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 241 bp overlap
Ar 1 dataset
Motif DE_48h DE_48h-Ar_MA0007.4 16 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BARX1 1 dataset
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 105 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BCL6B 1 dataset
Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 276 bp overlap
BSX 1 dataset
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 273 bp overlap
ChIP BLaER1 ENCFF274GAT 283 bp overlap
ChIP BLaER1 ENCFF364PUR 187 bp overlap
DLX1 1 dataset
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 227 bp overlap
ChIP hESC GSE26097.EOMES.hESC 252 bp overlap
EPAS1 1 dataset
Motif DE_48h DE_48h-EPAS1_MA2325.1 9 bp overlap
ERG 3 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 159 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 229 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 230 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 196 bp overlap
ETV1 1 dataset
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 366 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 225 bp overlap
GATA2 3 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 305 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 405 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 290 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 819 bp overlap
ChIP DE DE-GATA4-2 852 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 829 bp overlap
ChIP DE DE-GATA6-2 848 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 670 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 792 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 843 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 769 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 832 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 821 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 766 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 268 bp overlap
GBX2 1 dataset
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HIF1A 1 dataset
Motif DE_48h DE_48h-HIF1A_MA1106.2 6 bp overlap
HNF4A 1 dataset
ChIP hiPSC GSE104613.HNF4A.hiPSC 216 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 177 bp overlap
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 178 bp overlap
HOXA7 1 dataset
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Isl1 2 datasets
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 468 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 210 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 291 bp overlap
LBX2 1 dataset
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MSX1 1 dataset
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NKX6-3 1 dataset
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
Nobox 1 dataset
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 215 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 216 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 208 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 322 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 163 bp overlap
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
Prdm15 1 dataset
Motif DE_72h DE_72h-Prdm15_MA1616.2 11 bp overlap
RAX 1 dataset
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_48h DE_48h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 187 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 188 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 184 bp overlap
Runx1 1 dataset
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 809 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 277 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 765 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 755 bp overlap
SOX13 1 dataset
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 640 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 867 bp overlap
SOX2 1 dataset
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
SOX21 2 datasets
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 455 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 142 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 184 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 160 bp overlap
Sox1 1 dataset
Motif DE_72h DE_72h-Sox1_MA0870.1 15 bp overlap
Sox3 1 dataset
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 254 bp overlap
TEAD2 1 dataset
Motif DE_48h DE_48h-TEAD2_MA1121.2 7 bp overlap
TEAD4 1 dataset
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
TP53 2 datasets
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 174 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 351 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 254 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 339 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 312 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 306 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 346 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 223 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 138 bp overlap
ZNF558 1 dataset
ChIP HEK293T GSE78099.ZNF558.HEK293T 258 bp overlap
ZNF692 1 dataset
Motif DE_72h DE_72h-ZNF692_MA1986.2 8 bp overlap
Zic2 1 dataset
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap