chr1 : 96,580,795 96,581,376
581 bp 86 TFs 0 linked genes
This 581 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:96,575,795 – 96,586,376
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 473 bp overlap
ATF6 1 dataset
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 273 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 384 bp overlap
BRD4 3 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 237 bp overlap
ChIP hESC GSE33281.BRD4.hESC 68 bp overlap
CREB3L1 1 dataset
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 551 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 308 bp overlap
CTCF 6 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 332 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
ERF::NHLH1 3 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_24h DE_24h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-2 283 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 190 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 465 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 480 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 412 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 518 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 531 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 450 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 581 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 545 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 265 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 291 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 416 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MECOM 1 dataset
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 180 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 520 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 405 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 526 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 250 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 236 bp overlap
ChIP hESC GSE20650.NANOG.hESC 221 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 261 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 308 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX6 1 dataset
Motif DE_12h DE_12h-PAX6_MA0069.1 14 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 343 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 81 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 278 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 564 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 123 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 195 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 250 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 173 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 297 bp overlap
Rarg 3 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_24h DE_24h-Rarg_MA0859.2 15 bp overlap
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 170 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 281 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 178 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 428 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 413 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 487 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 286 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 423 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SOX2 2 datasets
ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 274 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 231 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 125 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TEAD4 6 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_24h DE_24h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 292 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 211 bp overlap
TGIF2 1 dataset
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
THRB 3 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif DE_24h DE_24h-THRB_MA1575.2 17 bp overlap
Motif ES_0h ES_0h-THRB_MA1575.2 17 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 184 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 154 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 244 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 217 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 245 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 216 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF644 1 dataset
ChIP HEK293T GSE62616.ZNF644.HEK293T 581 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap