chr5 : 88,393,056 88,393,469
413 bp 96 TFs 0 linked genes
This 413 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:88,388,056 – 88,398,469
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AR 6 datasets
ChIP 22Rv1_V5 GSE123618.AR.22Rv1_V5 123 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 278 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 185 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 159 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 115 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 134 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 413 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 186 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 410 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 272 bp overlap
CDX2 5 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 228 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 179 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 234 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 176 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 353 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 135 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 295 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 167 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 309 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 230 bp overlap
CTNNB1 2 datasets
ChIP LS180 GSE31939.CTNNB1.LS180 154 bp overlap
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 205 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 155 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 144 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 214 bp overlap
ELF1 1 dataset
Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 196 bp overlap
Erg 1 dataset
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 276 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 412 bp overlap
FOXA1 2 datasets
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 292 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 255 bp overlap
ChIP DE DE-FOXA2-1 293 bp overlap
ChIP DE DE-FOXA2-2 306 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 205 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GABPA 1 dataset
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
GATA1 3 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 165 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 166 bp overlap
GATA2 10 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 241 bp overlap
ChIP HepG2 ENCFF905PYM 332 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 228 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 228 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 248 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 177 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 200 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 199 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 231 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 181 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 288 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 143 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 332 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 400 bp overlap
ChIP DE DE-GATA4-2 387 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 325 bp overlap
ChIP Hep-G2 ENCSR590CNM.GATA4.Hep-G2 161 bp overlap
ChIP foregut GSE117136.GATA4.foregut 413 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 413 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 413 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 21 datasets
ChIP AGS GSE51705.GATA6.AGS 213 bp overlap
ChIP AGS GSE51936.GATA6.AGS 116 bp overlap
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 159 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 264 bp overlap
ChIP DE DE-GATA6-1 413 bp overlap
ChIP DE DE-GATA6-2 370 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 413 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 413 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 413 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 413 bp overlap
ChIP H9 ERP004206.GATA6.H9 266 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 413 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 413 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 274 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 413 bp overlap
ChIP foregut GSE117136.GATA6.foregut 398 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 408 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 413 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 413 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 413 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 284 bp overlap
ChIP K562 ENCFF968WBH 404 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 254 bp overlap
ChIP K562 ENCFF744ALD 383 bp overlap
HHEX 1 dataset
ChIP HepG2 ENCFF618PVM 270 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 238 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 79 bp overlap
HOXB13 2 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 178 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 71 bp overlap
Hmx2 1 dataset
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
IKZF1 1 dataset
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 292 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 246 bp overlap
Ikzf3 1 dataset
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 323 bp overlap
KDM1A 8 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 279 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 228 bp overlap
ChIP K562 ENCFF128TYE 354 bp overlap
ChIP K562 ENCFF133OLU 389 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 198 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 312 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 266 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 297 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 215 bp overlap
KLF5 3 datasets
ChIP HEK293 GSE88976.KLF5.HEK293 229 bp overlap
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 249 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 199 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NANOG 4 datasets
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 150 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 361 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 262 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 254 bp overlap
NKX2-2 2 datasets
Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 413 bp overlap
ChIP K562 ENCFF221HJH 373 bp overlap
NR2F2 7 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 249 bp overlap
ChIP HepG2 ENCFF483TVJ 216 bp overlap
ChIP K-562 ENCSR000BRS.NR2F2.K-562 252 bp overlap
ChIP K562 ENCFF004YPK 221 bp overlap
ChIP MCF-7 ENCFF329FZB 126 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 263 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 210 bp overlap
NR2F6 5 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 294 bp overlap
ChIP HepG2 ENCFF429VKC 154 bp overlap
ChIP K-562 ENCSR707QWA.NR2F6.K-562 405 bp overlap
ChIP K562 ENCFF388OQE 296 bp overlap
ChIP K562 ENCFF674RQA 283 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 413 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 101 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 413 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 73 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 260 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 345 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 209 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 363 bp overlap
PPARA::RXRA 2 datasets
Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 355 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 376 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 276 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 203 bp overlap
RELA 2 datasets
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 147 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 145 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 270 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 115 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 289 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 293 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 209 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 283 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 206 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 332 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 244 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 307 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 352 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 244 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 259 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 179 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 178 bp overlap
SPIB 1 dataset
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 205 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 211 bp overlap
TCF7L2 4 datasets
ChIP HEK293 ENCFF513JQN 413 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 413 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 309 bp overlap
ChIP Panc1 ENCFF829HHL 413 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 297 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 191 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 274 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 223 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 287 bp overlap
ZNF157 1 dataset
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 158 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 327 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 229 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 336 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 311 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 275 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 372 bp overlap
ZSCAN21 2 datasets
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 401 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 362 bp overlap