chr4 : 159,021,681 – 159,022,130
449 bp 71 TFs 0 linked genes
This 449 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:159,016,681 – 159,027,130
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 270 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 408 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 196 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BIP.BCL11A.WA01 102 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 171 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 262 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 345 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 369 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
DPF2 1 dataset
ChIP BIN-67 GSE117734.DPF2.BIN-67 212 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 125 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 273 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 238 bp overlap
ChIP hESC GSE17917.EP300.hESC 293 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 177 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 227 bp overlap
FLI1 3 datasets
ChIP A-673 GSE99959.FLI1.A-673 231 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 449 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 197 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 214 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 157 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Hic1 2 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 310 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 266 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 393 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 253 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 118 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 168 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 137 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 449 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 382 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 119 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 449 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 449 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 227 bp overlap
ChIP hESC GSE18292.NANOG.hESC 102 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 270 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 226 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 270 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 3 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 91 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 221 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 449 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 170 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 182 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 300 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 219 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 155 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 424 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 379 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 293 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 153 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 307 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 191 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 449 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 200 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 131 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 449 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 319 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RREB1 1 dataset
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 269 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 178 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 395 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 284 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 334 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 224 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 183 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 130 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 352 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 243 bp overlap
ChIP hESC GSE69479.SOX2.hESC 247 bp overlap
ChIP hESC GSE18292.SOX2.hESC 99 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 267 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 135 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 290 bp overlap
ChIP WTC11 ENCFF688PEU 383 bp overlap
SPDEF 2 datasets
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
Motif ES_0h ES_0h-SPDEF_MA0686.2 10 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 147 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 150 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 267 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 379 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 340 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 220 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 304 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 182 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 244 bp overlap
ZNF354C 1 dataset
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 287 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF623 1 dataset
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 220 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
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