chr4 : 41,748,050 41,748,788
738 bp 60 TFs 2 linked genes
This 738 bp open chromatin element is linked to PHOX2B-AS1 and PHOX2B and is bound by 60 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PHOX2B-AS1 at TSS At TSS Proximity
PHOX2B 341 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,743,050 – 41,753,788
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 296 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 643 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 555 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 456 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 99 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 558 bp overlap
BRD4 3 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 682 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 738 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 104 bp overlap
CBX2 2 datasets
ChIP HepG2 ENCFF838BNI 488 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 425 bp overlap
CBX7 3 datasets
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 738 bp overlap
ChIP hESC GSE133412.CBX7.hESC 738 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 738 bp overlap
CBX8 3 datasets
ChIP H1 ENCFF095JHA 197 bp overlap
ChIP H1 ENCFF095JHA 491 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 621 bp overlap
CEBPB 2 datasets
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 199 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 193 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 162 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 237 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 123 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 141 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 163 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 567 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 315 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 627 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 168 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 271 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 205 bp overlap
EZH2 27 datasets
ChIP A673 ENCFF790MVL 274 bp overlap
ChIP A673 ENCFF955JRZ 279 bp overlap
ChIP GM23248 ENCFF404ZHM 371 bp overlap
ChIP GM23338 ENCFF613YON 738 bp overlap
ChIP GM23338 ENCFF886DXX 335 bp overlap
ChIP H1 ENCFF232NZA 738 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 563 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 257 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 410 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 457 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 521 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 124 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 373 bp overlap
ChIP SK-N-MC ENCFF674XUJ 504 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 550 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 395 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 252 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 649 bp overlap
ChIP fibroblast of lung ENCFF479BAW 550 bp overlap
ChIP hepatocyte ENCFF552DZB 684 bp overlap
ChIP hepatocyte ENCFF552DZB 186 bp overlap
ChIP keratinocyte ENCFF070STK 293 bp overlap
ChIP keratinocyte ENCFF070STK 85 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 738 bp overlap
ChIP neural progenitor cell ENCFF472NFV 738 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 462 bp overlap
ChIP DE DE-FOXA2-2 496 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 383 bp overlap
ChIP DE DE-GATA4-2 522 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 449 bp overlap
ChIP DE DE-GATA6-2 647 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 580 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 658 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 674 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 424 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 666 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 99 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 382 bp overlap
ChIP hESC GSE133412.JARID2.hESC 738 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 738 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 219 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 233 bp overlap
MYC 1 dataset
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 294 bp overlap
MYCN 7 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 637 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 112 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 148 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 207 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 128 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 603 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 284 bp overlap
PCGF1 1 dataset
ChIP HEK293T_PCGF135fl GSE119618.PCGF1.HEK293T_PCGF135fl 578 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 516 bp overlap
PHC1 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PHC1.HEK293T_PCGF2fl 738 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 289 bp overlap
POLR2A 2 datasets
ChIP adrenal gland ENCFF892SFM 210 bp overlap
ChIP neural cell ENCFF604SPB 166 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 373 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 304 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 220 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 140 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 90 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 166 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 179 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 266 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 142 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 355 bp overlap
RNF2 13 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 279 bp overlap
ChIP H1 ENCFF239FFS 738 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 738 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 738 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 738 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 738 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 738 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 738 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.RNF2.HEK293T_PCGF2fl_OHT 288 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 738 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 228 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 102 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 636 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 611 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 219 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 380 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 462 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 220 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 497 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 434 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 316 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 248 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 442 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 86 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 342 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 181 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 389 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 195 bp overlap
SUZ12 15 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 261 bp overlap
ChIP H1 ENCFF881NFR 738 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 738 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 738 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 354 bp overlap
ChIP K562 ENCFF397TBJ 445 bp overlap
ChIP K562 ENCFF397TBJ 333 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 581 bp overlap
ChIP NT2/D1 ENCFF574SXS 601 bp overlap
ChIP NT2/D1 ENCFF574SXS 354 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 651 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 513 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 738 bp overlap
ChIP hESC_TKO GSE133412.SUZ12.hESC_TKO 448 bp overlap
ChIP hESC_TKO GSE133412.SUZ12.hESC_TKO 183 bp overlap
TAF1 3 datasets
ChIP SK-N-SH ENCFF630ERV 207 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 136 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 125 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 214 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 141 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 175 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 52 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 318 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 317 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 183 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 197 bp overlap