chr4 : 6,222,800 – 6,223,175
375 bp 65 TFs 1 linked gene
This 375 bp open chromatin element is linked to ENSG00000290803 and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000290803 582 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:6,217,800 – 6,228,175
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 225 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 55 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 228 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 329 bp overlap
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 220 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 181 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 185 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 288 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 152 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 130 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 89 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 335 bp overlap
DPF2 4 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 302 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 375 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 292 bp overlap
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 269 bp overlap
DRAP1 1 dataset
ChIP GM12878 GSE97661.DRAP1.GM12878 346 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 126 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 236 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 132 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 303 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 110 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 297 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 67 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 155 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 97 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 302 bp overlap
HOXB13 6 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 80 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 169 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 148 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 156 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 102 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 236 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 114 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 167 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 215 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 173 bp overlap
KDM1A 5 datasets
ChIP H1 ENCFF696SGD 231 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 375 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 236 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 261 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 332 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 353 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 222 bp overlap
MAX 1 dataset
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 145 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 112 bp overlap
MYC 2 datasets
ChIP Kelly GSE138295.MYC.Kelly 119 bp overlap
ChIP NB69 GSE138295.MYC.NB69 375 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 375 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 291 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 375 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 191 bp overlap
NR3C1 2 datasets
ChIP GM12878 ENCSR904YPP.NR3C1.GM12878 179 bp overlap
ChIP T-47D_R5020 GSE126859.NR3C1.T-47D_R5020 270 bp overlap
ONECUT2 1 dataset
ChIP MKN74 GSE113045.ONECUT2.MKN74 234 bp overlap
PDX1 2 datasets
ChIP islet ERP001456.PDX1.islet 172 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 199 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 375 bp overlap
PKNOX1 3 datasets
ChIP HEK293T ENCFF174WDB 153 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 217 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 157 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 274 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 290 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 375 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 271 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 142 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 375 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
PRDM15 3 datasets
ChIP Hep-G2 ENCSR011INW.PRDM15.Hep-G2 375 bp overlap
ChIP HepG2 ENCFF259LUZ 318 bp overlap
ChIP WTC11 ENCFF108TMF 305 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 89 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 174 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 123 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 84 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 224 bp overlap
REST 5 datasets
ChIP GM23338 ENCSR871KYB.REST.GM23338 132 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 89 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 128 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 160 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 356 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 276 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 246 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 182 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 98 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 98 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 375 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 285 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 112 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 248 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 189 bp overlap
SP1 6 datasets
ChIP GM12878 ENCFF620LDJ 274 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 199 bp overlap
ChIP H1 ENCFF263FUH 192 bp overlap
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 196 bp overlap
ChIP HCT116 ENCFF800LBN 312 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 261 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 179 bp overlap
SUZ12 1 dataset
ChIP hiPSC GSE124903.SUZ12.hiPSC 284 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 262 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 191 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 247 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 182 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 111 bp overlap
YY1 3 datasets
ChIP GM12878 ENCFF908JTL 288 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 115 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 159 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 72 bp overlap
ZNF280D 1 dataset
ChIP HEK293 ENCSR451CYX.ZNF280D.HEK293 375 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 375 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 55 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 230 bp overlap
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