chr3 : 190,941,815 190,942,234
419 bp 78 TFs 0 linked genes
This 419 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:190,936,815 – 190,947,234
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 390 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 359 bp overlap
ATOH7 2 datasets
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Motif ES_0h ES_0h-ATOH7_MA1468.1 10 bp overlap
Arid3b 2 datasets
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
Motif ES_0h ES_0h-Arid3b_MA0601.2 7 bp overlap
Atoh1 3 datasets
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BHLHA15 2 datasets
Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap
Motif ES_0h ES_0h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA0818.2 10 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 154 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 207 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 250 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 168 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 208 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 225 bp overlap
ChIP neural cell ENCFF442QNK 315 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 238 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 208 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 203 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 201 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 184 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 239 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 218 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 339 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 254 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HES7 2 datasets
Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap
Motif ES_0h ES_0h-HES7_MA0822.1 12 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 236 bp overlap
HMGA1 1 dataset
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 86 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 256 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
Lhx3 2 datasets
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 335 bp overlap
NANOG 2 datasets
ChIP H1 ENCFF747ZPQ 221 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 193 bp overlap
NEUROD1 7 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 341 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 193 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 419 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 419 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 419 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
ChIP NCI-H524 GSE69394.NEUROD1.NCI-H524 136 bp overlap
NEUROG1 2 datasets
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
Motif ES_0h ES_0h-NEUROG1_MA0623.2 10 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 246 bp overlap
OLIG2 2 datasets
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
Motif ES_0h ES_0h-OLIG2_MA0678.1 10 bp overlap
OLIG3 2 datasets
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
Motif ES_0h ES_0h-OLIG3_MA0827.1 10 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 241 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 255 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 257 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 156 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RAD21 1 dataset
ChIP IMR-5 GSE78957.RAD21.IMR-5 101 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 180 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 196 bp overlap
SCRT2 2 datasets
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 59 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 297 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 158 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 150 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 149 bp overlap
SMARCC1 5 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 224 bp overlap
ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 183 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 308 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 186 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 225 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 194 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 166 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 175 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 207 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 263 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF189 2 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF341 4 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 229 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 151 bp overlap
ZNF582 6 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Zic1::Zic2 4 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap