chr1 : 68,565,559 68,566,345
786 bp 95 TFs 0 linked genes
This 786 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:68,560,559 – 68,571,345
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 240 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
EBF1 3 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
EBF3 3 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap
Motif DE_36h DE_36h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 189 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 473 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif DE_24h DE_24h-ESRRA_MA0592.4 9 bp overlap
ESRRB 2 datasets
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Motif DE_24h DE_24h-ESRRB_MA0141.4 10 bp overlap
Ebf4 3 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
Esrrg 2 datasets
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
Motif DE_24h DE_24h-Esrrg_MA0643.2 9 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 128 bp overlap
ChIP DE DE-FOXA2-1 568 bp overlap
ChIP DE DE-FOXA2-2 483 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 532 bp overlap
ChIP DE DE-GATA4-2 558 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 430 bp overlap
GATA6 11 datasets
ChIP AGS GSE51936.GATA6.AGS 82 bp overlap
ChIP DE DE-GATA6-1 511 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 571 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 639 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 555 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 385 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 730 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 677 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 495 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 299 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Hand1 3 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
Motif DE_36h DE_36h-Hand1_MA2123.1 9 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
IRF3 3 datasets
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 3 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif DE_36h DE_36h-IRF7_MA0772.2 13 bp overlap
Irf1 3 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 390 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 292 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 418 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 400 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 365 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 189 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F2 2 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Motif DE_24h DE_24h-NR2F2_MA1111.2 7 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_24h DE_24h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
NR5A1 2 datasets
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Motif DE_24h DE_24h-NR5A1_MA1540.3 12 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_24h DE_24h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_24h DE_24h-Nr5A2_MA0505.3 9 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
PPARG 3 datasets
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap
Motif DE_36h DE_36h-PPARG_MA0066.2 19 bp overlap
Ppara 2 datasets
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Motif DE_24h DE_24h-Ppara_MA2338.1 7 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 166 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 120 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Motif DE_24h DE_24h-RORA_MA0071.1 10 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Rhox11 2 datasets
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Motif DE_24h DE_24h-Rhox11_MA0629.2 9 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD2 3 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 207 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 455 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 399 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 485 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 676 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 722 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 610 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 651 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 595 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 371 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 328 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 501 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 225 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 321 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 336 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 213 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 176 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF354C 6 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF816 3 datasets
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN31 2 datasets
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Motif DE_24h DE_24h-ZSCAN31_MA1722.2 18 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap