chr3 : 184,629,636 184,630,157
521 bp 71 TFs 7 linked genes
This 521 bp open chromatin element is linked to 7 target genes and is bound by 71 transcription factors.
Linked Genes
7 genes
Link type
Gene Expression Dist. to TSS Distance Link type
EPHB3 68.1 kb Distal Multiome
MAGEF1 82.2 kb Distal Multiome+HiCAR
ENSG00000272970 82.4 kb Distal Multiome+HiCAR
VPS8 182.3 kb Distal Multiome
POLR2H 268.1 kb Distal Multiome
CLCN2 268.2 kb Distal Multiome
FAM131A 293.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:184,624,636 – 184,635,157
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 147 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 311 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 167 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 375 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 117 bp overlap
BRD4 8 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 378 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 521 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 148 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 173 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 145 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 221 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 349 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 117 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 181 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 322 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 135 bp overlap
CTCF 12 datasets
ChIP H9 ENCFF152GTF 160 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 138 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 178 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 255 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP endodermal cell ENCFF471YCZ 178 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 474 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural progenitor cell ENCFF581WPG 521 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 350 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 199 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 169 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 201 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 243 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 200 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 76 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 282 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 254 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 378 bp overlap
ChIP DE DE-GATA4-2 400 bp overlap
ChIP foregut GSE117136.GATA4.foregut 512 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 521 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 521 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 404 bp overlap
ChIP DE DE-GATA6-2 505 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 481 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 456 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 499 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 376 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 521 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 521 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 346 bp overlap
ChIP foregut GSE117136.GATA6.foregut 506 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 407 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 393 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 370 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 348 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 236 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 213 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 217 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 414 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 107 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 408 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 251 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 235 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 67 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 271 bp overlap
ChIP melanocyte GSE115845.MAX.melanocyte 122 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 262 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 292 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 521 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 171 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 146 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 235 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 208 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 223 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 321 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 180 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 186 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 521 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 521 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 338 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 116 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 88 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 391 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 220 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 459 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 460 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 479 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 379 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 401 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 383 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 487 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 353 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 217 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 139 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 213 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 219 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 181 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 249 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 214 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 377 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 172 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 241 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 245 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 245 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 106 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 292 bp overlap
ZFX 3 datasets
ChIP HEK293T ENCFF402JZW 478 bp overlap
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 521 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 521 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 205 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 521 bp overlap