chr3 : 162,763,922 162,764,901
979 bp 86 TFs 0 linked genes
This 979 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:162,758,922 – 162,769,901
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 13 datasets
ChIP VCaP GSE148358.AR.VCaP 413 bp overlap
ChIP VCaP GSE32892.AR.VCaP 137 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 465 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 358 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 362 bp overlap
ChIP VCaP_R1881_10C30 GSE32892.AR.VCaP_R1881_10C30 153 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 320 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 339 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 236 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 503 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 620 bp overlap
ChIP VCaP_siBCOR-EtOH GSE122572.AR.VCaP_siBCOR-EtOH 284 bp overlap
ChIP VCaP_siNON-EtOH GSE122572.AR.VCaP_siNON-EtOH 204 bp overlap
Ahr::Arnt 2 datasets
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 702 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 754 bp overlap
BRD4 1 dataset
ChIP VCaP GSE148358.BRD4.VCaP 463 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 289 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 223 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DAXX 2 datasets
ChIP PC-3 GSE68647.DAXX.PC-3 127 bp overlap
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 127 bp overlap
Dmbx1 2 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 447 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF451CNG 248 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 382 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 148 bp overlap
ERG 4 datasets
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 170 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 528 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 445 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 82 bp overlap
FEZF2 1 dataset
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 205 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 176 bp overlap
FOSL1 1 dataset
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 78 bp overlap
FOSL2 5 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 113 bp overlap
ChIP A-549 ENCSR448TVS.FOSL2.A-549 111 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 67 bp overlap
ChIP SK-N-SH ENCFF127ZDW 150 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 167 bp overlap
FOXA1 1 dataset
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 503 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 786 bp overlap
ChIP DE DE-FOXA2-2 725 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 227 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 742 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 438 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 181 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 343 bp overlap
GATA3 4 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 300 bp overlap
ChIP A549 ENCFF226FVV 212 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 312 bp overlap
ChIP SK-N-SH ENCFF040SSB 210 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 727 bp overlap
ChIP DE DE-GATA4-2 849 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 213 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 303 bp overlap
ChIP foregut GSE117136.GATA4.foregut 636 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 884 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 390 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 839 bp overlap
ChIP DE DE-GATA6-2 855 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 838 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 922 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 878 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 877 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 918 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 923 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 313 bp overlap
ChIP foregut GSE117136.GATA6.foregut 617 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 814 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gfi1B 2 datasets
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HIF1A 1 dataset
ChIP PC-3_siOC2 GSE106305.HIF1A.PC-3_siOC2 71 bp overlap
HNF1A 2 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 250 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 178 bp overlap
HOXB13 2 datasets
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 264 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 146 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 253 bp overlap
JUND 4 datasets
ChIP SK-N-SH ENCFF551NEQ 173 bp overlap
ChIP SK-N-SH ENCFF971JKN 167 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 191 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 136 bp overlap
KLF1 2 datasets
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF2 2 datasets
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
KLF6 2 datasets
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
LIN54 1 dataset
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP VCaP GSE148358.MED1.VCaP 208 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 59 bp overlap
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 55 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 450 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFATC4 2 datasets
Motif DE_36h DE_36h-NFATC4_MA1525.3 9 bp overlap
Motif DE_60h DE_60h-NFATC4_MA1525.3 9 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 191 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
OLIG2 1 dataset
Motif DE_36h DE_36h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_36h DE_36h-OLIG3_MA0827.1 10 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 72 bp overlap
PGR 2 datasets
ChIP endometrium_Midsecretory GSE132712.PGR.endometrium_Midsecretory 300 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 370 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POLR2A 3 datasets
ChIP SK-N-SH ENCFF683PFH 304 bp overlap
ChIP sigmoid colon ENCFF725QFT 179 bp overlap
ChIP sigmoid colon ENCFF748YVT 342 bp overlap
POU3F1 2 datasets
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F4 2 datasets
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
RELA 4 datasets
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 58 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 170 bp overlap
RELB 1 dataset
Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCSR000BVG.RXRA.SK-N-SH 143 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 606 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 535 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 337 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 267 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 746 bp overlap
SMARCA4 12 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 94 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 76 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 208 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 171 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 230 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 283 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 94 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 63 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 155 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 54 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 82 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 372 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 251 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 83 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 58 bp overlap
Stat2 2 datasets
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 221 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 386 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TCF12 2 datasets
ChIP A-549 ENCSR000BQQ.TCF12.A-549 116 bp overlap
ChIP SK-N-SH ENCFF147AHB 225 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 195 bp overlap
TOX 1 dataset
ChIP SK-N-SH ENCFF977TQV 179 bp overlap
ZIM3 2 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF135 2 datasets
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF263 2 datasets
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ZNF382 1 dataset
Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap
ZNF547 1 dataset
ChIP HEK293T GSE78099.ZNF547.HEK293T 251 bp overlap
ZNF558 3 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZSCAN16 2 datasets
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_60h DE_60h-ZSCAN16_MA2100.1 18 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zfx 2 datasets
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap