chr3 : 148,440,724 148,441,030
306 bp 102 TFs 0 linked genes
This 306 bp open chromatin element has no linked target genes and is bound by 102 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:148,435,724 – 148,446,030
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 206 bp overlap
ALX3 1 dataset
Motif DE_24h DE_24h-ALX3_MA0634.2 6 bp overlap
ATF4 1 dataset
Motif DE_24h DE_24h-ATF4_MA0833.3 10 bp overlap
CEBPA 5 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF175DFS 104 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 179 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 158 bp overlap
ChIP liver ERP002306.CEBPA.liver 161 bp overlap
CEBPB 3 datasets
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 201 bp overlap
ChIP HepG2 ENCFF074JWB 190 bp overlap
ChIP HepG2 ENCFF536NTI 192 bp overlap
CEBPG 2 datasets
Motif DE_24h DE_24h-CEBPG_MA1636.2 10 bp overlap
ChIP HepG2 ENCFF503XBC 235 bp overlap
CTCF 1 dataset
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
CUX1 1 dataset
Motif DE_24h DE_24h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_24h DE_24h-CUX2_MA0755.2 9 bp overlap
DRGX 1 dataset
Motif DE_24h DE_24h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_24h DE_24h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_24h DE_24h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_24h DE_24h-EN1_MA0027.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 287 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 224 bp overlap
EVX1 1 dataset
Motif DE_24h DE_24h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_24h DE_24h-EVX2_MA0888.2 6 bp overlap
FOXA2 1 dataset
ChIP Caco-2 GSE66218.FOXA2.Caco-2 209 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 306 bp overlap
ChIP DE DE-GATA4-2 306 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 261 bp overlap
GATA5 1 dataset
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 264 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 306 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 306 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 306 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 306 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 306 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 200 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 295 bp overlap
GSX1 1 dataset
Motif DE_24h DE_24h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_24h DE_24h-GSX2_MA0893.3 7 bp overlap
Gata3 1 dataset
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
HNF1A 1 dataset
Motif DE_24h DE_24h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_24h DE_24h-HNF1B_MA0153.2 13 bp overlap
HOXA1 1 dataset
Motif DE_24h DE_24h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_24h DE_24h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_24h DE_24h-HOXA3_MA2119.1 7 bp overlap
HOXA6 1 dataset
Motif DE_24h DE_24h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_24h DE_24h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_24h DE_24h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_24h DE_24h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_24h DE_24h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_24h DE_24h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_24h DE_24h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_24h DE_24h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_24h DE_24h-HOXC8_MA1505.2 6 bp overlap
HOXD8 1 dataset
Motif DE_24h DE_24h-HOXD8_MA0910.3 7 bp overlap
HSF1 1 dataset
ChIP HT29 GSE38901.HSF1.HT29 175 bp overlap
Hnf1A 2 datasets
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Hoxd13 2 datasets
Motif DE_24h DE_24h-Hoxd13_MA0909.4 7 bp overlap
Motif DE_24h DE_24h-Hoxd13_MA0909.4 7 bp overlap
INSM1 1 dataset
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
IRF3 1 dataset
Motif DE_24h DE_24h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
Motif DE_24h DE_24h-IRF4_MA1419.2 14 bp overlap
ISX 1 dataset
Motif DE_24h DE_24h-ISX_MA0654.2 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 306 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 306 bp overlap
LHX5 1 dataset
Motif DE_24h DE_24h-LHX5_MA1519.2 7 bp overlap
Lef1 2 datasets
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
Lhx3 1 dataset
Motif DE_24h DE_24h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif DE_24h DE_24h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_24h DE_24h-Lhx8_MA0705.2 6 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 219 bp overlap
MEOX1 1 dataset
Motif DE_24h DE_24h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_24h DE_24h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_24h DE_24h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_24h DE_24h-MNX1_MA0707.3 6 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NKX2-2 1 dataset
Motif DE_24h DE_24h-NKX2-2_MA1645.2 8 bp overlap
NKX6-2 1 dataset
Motif DE_24h DE_24h-NKX6-2_MA0675.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_24h DE_24h-Nr2F6_MA0728.1 15 bp overlap
PDX1 1 dataset
Motif DE_24h DE_24h-PDX1_MA0132.3 6 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
POU4F1 1 dataset
Motif DE_24h DE_24h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_24h DE_24h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_24h DE_24h-POU4F3_MA0791.2 12 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA0628.2 6 bp overlap
PPARA::RXRA 2 datasets
Motif DE_24h DE_24h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_24h DE_24h-PPARARXRA_MA1148.2 17 bp overlap
PPARG 2 datasets
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 249 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 247 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 110 bp overlap
PRRX1 1 dataset
Motif DE_24h DE_24h-PRRX1_MA0716.2 6 bp overlap
RAX2 1 dataset
Motif DE_24h DE_24h-RAX2_MA0717.2 6 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
RXRA 1 dataset
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 140 bp overlap
SHOX 1 dataset
Motif DE_24h DE_24h-SHOX_MA0630.2 6 bp overlap
SMAD2 1 dataset
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 306 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 304 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 306 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 306 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 141 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 306 bp overlap
Shox2 1 dataset
Motif DE_24h DE_24h-Shox2_MA0720.2 6 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
TBX2 1 dataset
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 186 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 255 bp overlap
TCF7 4 datasets
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 259 bp overlap
ChIP HepG2 ENCFF628OFQ 306 bp overlap
TCF7L1 2 datasets
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 5 datasets
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 237 bp overlap
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 262 bp overlap
ChIP HepG2 ENCFF510OLG 306 bp overlap
TLX2 1 dataset
Motif DE_24h DE_24h-TLX2_MA1577.2 6 bp overlap
TRPS1 1 dataset
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
UNCX 1 dataset
Motif DE_24h DE_24h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif DE_24h DE_24h-VAX2_MA0723.3 6 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZBTB26 1 dataset
Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap
ZNF382 1 dataset
Motif DE_24h DE_24h-ZNF382_MA1594.1 24 bp overlap
ZNF682 1 dataset
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
mix-a 1 dataset
Motif DE_24h DE_24h-mix-a_MA0621.2 7 bp overlap