chr1 : 54,476,017 – 54,476,168
151 bp 65 TFs 0 linked genes
This 151 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:54,471,017 – 54,481,168
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 98 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 93 bp overlap
BHLHE22 1 dataset
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 63 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 53 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 88 bp overlap
BRD4 11 datasets
ChIP DND41 GSE54379.BRD4.DND41 151 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 142 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 69 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 80 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 151 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 92 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 57 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 102 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 97 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 151 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 151 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 151 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 95 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 140 bp overlap
E2F6 1 dataset
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
E2F8 1 dataset
Motif DE_24h DE_24h-E2F8_MA0865.3 9 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 86 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 100 bp overlap
EZH2 3 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 129 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 85 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 53 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 111 bp overlap
ChIP K562 ENCFF015GDS 110 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 151 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 151 bp overlap
KDM4B 1 dataset
ChIP K562 ENCFF819LGW 151 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 148 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 130 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 136 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 151 bp overlap
MTA1 1 dataset
ChIP K562 ENCFF230ZKA 52 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 80 bp overlap
ChIP neural cell ENCFF623HQN 112 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 151 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 151 bp overlap
ChIP P493-6_4HR GSE125863.MYC.P493-6_4HR 90 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 151 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 151 bp overlap
NBN 1 dataset
ChIP K562 ENCFF146YTY 55 bp overlap
NFRKB 1 dataset
ChIP K562 ENCFF057YFW 108 bp overlap
NOTCH1 2 datasets
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 60 bp overlap
ChIP HPBALL GSE39263.NOTCH1.HPBALL 151 bp overlap
Neurod2 1 dataset
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 94 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 151 bp overlap
ChIP GM23338 ENCFF450WCS 125 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 119 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 151 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 147 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 111 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 151 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 151 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
RREB1 1 dataset
Motif DE_24h DE_24h-RREB1_MA0073.2 19 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 111 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 123 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 151 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 108 bp overlap
SMARCA4 5 datasets
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 151 bp overlap
ChIP K562 ENCFF316MCJ 52 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 57 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 151 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 151 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 151 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 93 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 151 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 65 bp overlap
TARDBP 2 datasets
ChIP K-562 ENCSR429XTR.TARDBP.K-562 79 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 99 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 151 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 151 bp overlap
ChIP K562 ENCFF875HLX 67 bp overlap
ChIP K562 ENCFF875HLX 67 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 110 bp overlap
ZFP91 3 datasets
ChIP K-562 ENCSR898XMH.ZFP91.K-562 151 bp overlap
ChIP K562 ENCFF185FKB 151 bp overlap
ChIP K562 ENCFF501CDP 140 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 145 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 110 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 98 bp overlap
ZNF331 1 dataset
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
ZNF410 1 dataset
ChIP K-562 GSE97661.ZNF410.K-562 65 bp overlap
ZNF740 2 datasets
ChIP K562 ENCFF505NFV 151 bp overlap
ChIP K562 ENCFF913GVQ 78 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF816 1 dataset
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 54 bp overlap
Zfp809 1 dataset
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
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