chr3 : 21,665,162 – 21,666,084

922 bp 78 TFs 0 linked genes

This 922 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

78 transcription factors

AR 2 datasets

ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 281 bp overlap

ChIP MCF-7 GSE48930.AR.MCF-7 223 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 685 bp overlap

ChIP H1 ENCFF399KAM 750 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 707 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap

BRD4 6 datasets

ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 186 bp overlap

ChIP MV4-11_IBET151_5000nM GSE120715.BRD4.MV4-11_IBET151_5000nM 131 bp overlap

ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 106 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 211 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 302 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 471 bp overlap

CEBPB 1 dataset

ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 124 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 597 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 279 bp overlap

CREB1 1 dataset

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 146 bp overlap

CTCF 4 datasets

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 184 bp overlap

ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 228 bp overlap

ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 366 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

EP300 2 datasets

ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 171 bp overlap

ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 163 bp overlap

ESR1 8 datasets

ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 174 bp overlap

ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap

ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 127 bp overlap

ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 224 bp overlap

ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 236 bp overlap

ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 286 bp overlap

ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 221 bp overlap

ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 239 bp overlap

ESR1_Y537C 1 dataset

ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 399 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOXA1 2 datasets

ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 218 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 207 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

GABPA 1 dataset

ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 157 bp overlap

GRHL2 8 datasets

ChIP HBE GSE46194.GRHL2.HBE 261 bp overlap

ChIP LNCaP GSE80256.GRHL2.LNCaP 300 bp overlap

ChIP MCF-7 GSE109820.GRHL2.MCF-7 290 bp overlap

ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 271 bp overlap

ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 610 bp overlap

ChIP OVCA429 GSE71018.GRHL2.OVCA429 239 bp overlap

ChIP PEO1 GSE71018.GRHL2.PEO1 326 bp overlap

ChIP T-47D GSE99680.GRHL2.T-47D 249 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

Hic1 1 dataset

Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap

IRF4 1 dataset

ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 169 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

KDM5B 1 dataset

ChIP HCC2157 GSE46055.KDM5B.HCC2157 203 bp overlap

MAX 2 datasets

ChIP Ishikawa ENCFF064TDQ 461 bp overlap

ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 128 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 180 bp overlap

MYB 1 dataset

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 604 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 283 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 154 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 272 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIC 2 datasets

ChIP Ishikawa ENCFF029AAD 381 bp overlap

ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 214 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NOTCH1 1 dataset

ChIP HPBALL GSE39263.NOTCH1.HPBALL 312 bp overlap

NR1I3 2 datasets

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

Motif ES_0h ES_0h-NR1I3_MA1534.2 8 bp overlap

NR3C1 1 dataset

ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 298 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 147 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

PAX3-FOXO1 1 dataset

ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 177 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POLR2A 1 dataset

ChIP gastroesophageal sphincter ENCFF070PCA 149 bp overlap

POU2F1 1 dataset

ChIP T-47D GSE148277.POU2F1.T-47D 274 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 548 bp overlap

RAD21 1 dataset

ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 80 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 368 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RELA 1 dataset

ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 143 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

RXRA 1 dataset

ChIP liver ENCFF807CIA 223 bp overlap

Rfx6 1 dataset

Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 224 bp overlap

SMARCB1 2 datasets

ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 444 bp overlap

ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 239 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 204 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP RENVM GSE49404.SOX2.RENVM 206 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 235 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

SS18 2 datasets

ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 267 bp overlap

ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 237 bp overlap

STAT3 10 datasets

ChIP BT-474 GSE152203.STAT3.BT-474 179 bp overlap

ChIP HCC1187 GSE152203.STAT3.HCC1187 358 bp overlap

ChIP HCC70 GSE152203.STAT3.HCC70 153 bp overlap

ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 386 bp overlap

ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 259 bp overlap

ChIP SUM159PT GSE152203.STAT3.SUM159PT 220 bp overlap

ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 191 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 292 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 216 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 246 bp overlap

Sox1 1 dataset

Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

TCF12 1 dataset

ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 180 bp overlap

TEAD4 3 datasets

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

ChIP H1 ENCFF778PAX 245 bp overlap

ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 207 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 225 bp overlap

ZNF214 1 dataset

Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF281 1 dataset

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 139 bp overlap

ZNF701 1 dataset

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap