chr3 : 12,727,373 12,728,371
998 bp 102 TFs 0 linked genes
This 998 bp open chromatin element has no linked target genes and is bound by 102 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:12,722,373 – 12,733,371
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_72h DE_72h-ARNT2_MA1464.2 8 bp overlap
Arid3a 2 datasets
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
Arnt 1 dataset
Motif DE_72h DE_72h-Arnt_MA0004.1 6 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 160 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 250 bp overlap
CLOCK 1 dataset
Motif DE_72h DE_72h-CLOCK_MA0819.3 7 bp overlap
CTCF 4 datasets
ChIP K-562 ENCSR000AKO.CTCF.K-562 251 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 190 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
CTCFL 1 dataset
Motif DE_72h DE_72h-CTCFL_MA1102.3 8 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 200 bp overlap
ChIP BLaER1 ENCFF274GAT 187 bp overlap
ChIP BLaER1 ENCFF335XTP 98 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 172 bp overlap
ESR1 1 dataset
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 122 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
Erg 1 dataset
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 330 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 353 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 294 bp overlap
ChIP DE DE-FOXA2-1 751 bp overlap
ChIP DE DE-FOXA2-2 797 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 292 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GABPA 1 dataset
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 263 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 427 bp overlap
ChIP DE DE-GATA4-1 956 bp overlap
ChIP DE DE-GATA4-2 998 bp overlap
ChIP foregut GSE117136.GATA4.foregut 946 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 549 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 286 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 418 bp overlap
GATA6 8 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 122 bp overlap
ChIP DE DE-GATA6-1 998 bp overlap
ChIP DE DE-GATA6-2 998 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 279 bp overlap
ChIP foregut GSE117136.GATA6.foregut 611 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 446 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 352 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 413 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HES6 1 dataset
Motif DE_72h DE_72h-HES6_MA1493.1 10 bp overlap
HEY2 1 dataset
Motif DE_72h DE_72h-HEY2_MA0649.2 9 bp overlap
HNF4A 1 dataset
Motif DE_72h DE_72h-HNF4A_MA1494.2 14 bp overlap
HOXA10 1 dataset
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
IKZF1 1 dataset
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Isl1 1 dataset
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 305 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 208 bp overlap
Lhx3 1 dataset
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MAX 1 dataset
Motif DE_72h DE_72h-MAX_MA0058.4 6 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 159 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MLXIPL 1 dataset
Motif DE_72h DE_72h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_72h DE_72h-MNT_MA0825.2 6 bp overlap
Mecom 2 datasets
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Mlxip 1 dataset
Motif DE_72h DE_72h-Mlxip_MA0622.2 6 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NCOR2 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 177 bp overlap
Npas2 1 dataset
Motif DE_72h DE_72h-Npas2_MA0626.2 8 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 202 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 156 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 420 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 182 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Pgr 1 dataset
Motif DE_72h DE_72h-Pgr_MA2323.1 17 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RUNX3 1 dataset
Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 319 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 962 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 319 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 276 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 230 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 326 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap
Stat5a 1 dataset
Motif DE_72h DE_72h-Stat5a_MA1624.2 9 bp overlap
TBX5 6 datasets
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
ChIP G296S GSE85628.TBX5.G296S 641 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 641 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 688 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 688 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 260 bp overlap
TEAD1 1 dataset
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 144 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_72h DE_72h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_72h DE_72h-TFAP2C_MA0815.1 13 bp overlap
TP53 1 dataset
ChIP SaOS-2 ERP002038.TP53.SaOS-2 140 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 215 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 166 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 418 bp overlap
ZNF175 1 dataset
ChIP HEK293 GSE76494.ZNF175.HEK293 269 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF75D 1 dataset
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap