chr2 : 176,507,599 176,508,319
720 bp 77 TFs 2 linked genes
This 720 bp open chromatin element is linked to NRAL and MTX2 and is bound by 77 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
NRAL at TSS At TSS Proximity
MTX2 238.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:176,502,599 – 176,513,319
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ATF3 1 dataset
ChIP primary-dermal-fibroblasts_overexpressed GSE81403.ATF3.primary-dermal-fibroblasts_overexpressed 179 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 228 bp overlap
BRD4 2 datasets
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 318 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 397 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 107 bp overlap
CDX1 1 dataset
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CEBPB 4 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 263 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 186 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 162 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 257 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 183 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 409 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 368 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 235 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 483 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 631 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 505 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 160 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 554 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 189 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 279 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 224 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 367 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 277 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 280 bp overlap
ChIP DE DE-FOXA2-1 720 bp overlap
ChIP DE DE-FOXA2-2 485 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 126 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 720 bp overlap
ChIP DE DE-GATA4-2 518 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 308 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 286 bp overlap
GATA6 5 datasets
ChIP AGS GSE51705.GATA6.AGS 204 bp overlap
ChIP DE DE-GATA6-1 661 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 663 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 508 bp overlap
HOXA10 1 dataset
Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 490 bp overlap
HOXD9 1 dataset
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 266 bp overlap
MED1 4 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 353 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 250 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 279 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 214 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 76 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 228 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 720 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 160 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 159 bp overlap
PRDM6 4 datasets
ChIP HEK293 ENCFF283AJL 212 bp overlap
ChIP HEK293 ENCFF283AJL 445 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 404 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 244 bp overlap
RELA 4 datasets
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 347 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 251 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 383 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 337 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 258 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 702 bp overlap
Runx1 1 dataset
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 623 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 681 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 690 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 256 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 266 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 205 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 534 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 382 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 332 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 532 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 361 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 230 bp overlap
SMARCA4 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 524 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 494 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 389 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 508 bp overlap
SOX4 1 dataset
ChIP HCC1954 GSE104760.SOX4.HCC1954 260 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 97 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 720 bp overlap
STAT3 3 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 211 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 269 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 211 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 230 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 319 bp overlap
TEAD4 3 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 591 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 268 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 341 bp overlap
TFAP2A 1 dataset
Motif DE_60h DE_60h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_60h DE_60h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_60h DE_60h-TFAP2C_MA0524.3 11 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 428 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 430 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF143 1 dataset
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 280 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 56 bp overlap
ZNF24 1 dataset
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF274 1 dataset
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 191 bp overlap
ZNF354A 2 datasets
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ChIP HEK293 GSE76494.ZNF354A.HEK293 174 bp overlap
ZNF418 1 dataset
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 294 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF692 1 dataset
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap
Zfx 1 dataset
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap