chr1 : 44,512,396 44,512,984
588 bp 68 TFs 7 linked genes
This 588 bp open chromatin element is linked to 7 target genes and is bound by 68 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
RNF220 107.5 kb Distal Multiome
ERI3 157.4 kb Distal Multiome
TMEM53 161.8 kb Distal Multiome
ARMH1 162.0 kb Distal Multiome
KIF2C 227.2 kb Distal Multiome
RPS8 262.9 kb Distal Multiome
DMAP1 299.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:44,507,396 – 44,517,984
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 174 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 287 bp overlap
BRCA1 1 dataset
ChIP SH-EP_pWZL-MYCNwt GSE111905.BRCA1.SH-EP_pWZL-MYCNwt 114 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 225 bp overlap
BRD4 1 dataset
ChIP COLO-741 GSE73319.BRD4.COLO-741 287 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 415 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 65 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 425 bp overlap
ChIP BLaER1 ENCFF364PUR 415 bp overlap
ChIP BLaER1 ENCFF460KDD 62 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 119 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 189 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 174 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 330 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 196 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 360 bp overlap
Esrrg 2 datasets
Motif DE_24h DE_24h-Esrrg_MA0643.2 9 bp overlap
Motif DE_36h DE_36h-Esrrg_MA0643.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 507 bp overlap
ChIP DE DE-FOXA2-2 394 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 512 bp overlap
ChIP DE DE-GATA4-2 479 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 528 bp overlap
ChIP DE DE-GATA6-2 398 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 574 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 550 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 588 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 357 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 573 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 588 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 439 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 263 bp overlap
HOXC13 2 datasets
Motif DE_24h DE_24h-HOXC13_MA0907.2 9 bp overlap
Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 458 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 484 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 550 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 555 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 217 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 286 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 237 bp overlap
MAZ 1 dataset
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 318 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 232 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 239 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 307 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 195 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 233 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 229 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 158 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 179 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 261 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 278 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 532 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 328 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 64 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 462 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 588 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 588 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 588 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 588 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 588 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 444 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 333 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 205 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 334 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 479 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 588 bp overlap
STAT3 2 datasets
Motif DE_24h DE_24h-STAT3_MA0144.3 9 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 387 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 358 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 203 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 298 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 115 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 310 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF320 2 datasets
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF547 2 datasets
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF684 1 dataset
Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap
ZNF707 1 dataset
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
ZNF75A 1 dataset
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
ZNF76 1 dataset
Motif DE_24h DE_24h-ZNF76_MA1716.2 17 bp overlap