chr2 : 139,685,242 – 139,685,889

647 bp 79 TFs 0 linked genes

This 647 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

79 transcription factors

AR 1 dataset

ChIP MCF-7 GSE48930.AR.MCF-7 190 bp overlap

ARID1A 1 dataset

ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 84 bp overlap

ARNT 4 datasets

ChIP A-549 GSE85352.ARNT.A-549 577 bp overlap

ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 320 bp overlap

ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 224 bp overlap

ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 359 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ATF3 1 dataset

ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 99 bp overlap

BRD2 1 dataset

ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 202 bp overlap

BRD3 1 dataset

ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 328 bp overlap

BRD4 1 dataset

ChIP hESC GSE33281.BRD4.hESC 68 bp overlap

CDK6 1 dataset

ChIP KB_IL GSE52469.CDK6.KB_IL 108 bp overlap

CHD8 1 dataset

ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 160 bp overlap

CREBBP 2 datasets

ChIP PC-3 GSE147455.CREBBP.PC-3 177 bp overlap

ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 137 bp overlap

CTCF 12 datasets

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

ChIP GM23338 ENCFF772DML 190 bp overlap

ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 192 bp overlap

ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 163 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 207 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 194 bp overlap

ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 169 bp overlap

ChIP MCF-7 ENCFF139NQI 268 bp overlap

ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 241 bp overlap

ChIP WA01 ENCSR000DLK.CTCF.WA01 104 bp overlap

ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap

ChIP islet ERP004003.CTCF.islet 250 bp overlap

EBF3 1 dataset

Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap

EGR2 1 dataset

ChIP HEK293 ENCFF336LFH 155 bp overlap

ELF3 1 dataset

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 60 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::FOXO1 1 dataset

Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap

ESR1 1 dataset

ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 101 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

Ebf2 1 dataset

Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 41 datasets

ChIP 22Rv1 GSE96652.FOXA1.22Rv1 101 bp overlap

ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 130 bp overlap

ChIP A-549 ENCSR000BPX.FOXA1.A-549 67 bp overlap

ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 140 bp overlap

ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 197 bp overlap

ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 133 bp overlap

ChIP LNCaP GSE64656.FOXA1.LNCaP 146 bp overlap

ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 242 bp overlap

ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 154 bp overlap

ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 186 bp overlap

ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 100 bp overlap

ChIP MCF-7 GSE81714.FOXA1.MCF-7 73 bp overlap

ChIP MCF-7 GSE80808.FOXA1.MCF-7 89 bp overlap

ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 76 bp overlap

ChIP MCF-7 GSE140185.FOXA1.MCF-7 113 bp overlap

ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 84 bp overlap

ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 90 bp overlap

ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 98 bp overlap

ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 52 bp overlap

ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 94 bp overlap

ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 153 bp overlap

ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 65 bp overlap

ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 164 bp overlap

ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 152 bp overlap

ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 63 bp overlap

ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 91 bp overlap

ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 84 bp overlap

ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 66 bp overlap

ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 92 bp overlap

ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 74 bp overlap

ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 61 bp overlap

ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 74 bp overlap

ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 97 bp overlap

ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 162 bp overlap

ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 134 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 153 bp overlap

ChIP ZR751 GSE72249.FOXA1.ZR751 178 bp overlap

ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 169 bp overlap

ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 161 bp overlap

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 153 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 127 bp overlap

FOXA2 3 datasets

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 148 bp overlap

ChIP KerCT GSE90454.FOXA2.KerCT 137 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 117 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

GRHL2 1 dataset

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HIF1A 3 datasets

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 310 bp overlap

ChIP PC-3_hypoxia_siSMAD3 GSE106305.HIF1A.PC-3_hypoxia_siSMAD3 250 bp overlap

IRF7 1 dataset

Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap

JUN 1 dataset

ChIP DE_D1 S40-DE-d1-JUN-exp2 276 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

MEF2A 1 dataset

Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MEF2C 1 dataset

Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap

MEIS3 1 dataset

Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NKX2-4 1 dataset

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

Nkx2-1 1 dataset

Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap

OGT 1 dataset

ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 506 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 165 bp overlap

PRDM1 2 datasets

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 574 bp overlap

RAD21 2 datasets

ChIP H1 ENCFF698EWO 241 bp overlap

ChIP HAP1 GSE126634.RAD21.HAP1 369 bp overlap

REL 1 dataset

Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

SIX2 3 datasets

ChIP HEK GSE73865.SIX2.HEK 144 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 100 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 180 bp overlap

SMAD1 2 datasets

ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap

ChIP BG03 GSE36578.SMAD1.BG03 119 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMARCA4 3 datasets

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 171 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 221 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 199 bp overlap

SOX11 1 dataset

ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap

SOX2 2 datasets

ChIP NCI-H520 GSE137459.SOX2.NCI-H520 326 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 148 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

VEZF1 1 dataset

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 144 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 326 bp overlap

ZKSCAN1 2 datasets

Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 86 bp overlap

ZNF454 1 dataset

Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 182 bp overlap

ZNF512 1 dataset

ChIP K562 ENCFF601EMZ 198 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF530 1 dataset

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

ZNF76 1 dataset

Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap

ZSCAN21 1 dataset

Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap