chr1 : 39,318,245 39,318,603
358 bp 67 TFs 0 linked genes
This 358 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:39,313,245 – 39,323,603
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 161 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF980NSF 251 bp overlap
BCL11A 6 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 145 bp overlap
ChIP CD34_Day7_15min GSE104676.BCL11A.CD34_Day7_15min 119 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 154 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 102 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 72 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 69 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 254 bp overlap
ChIP K562 ENCFF673OEZ 307 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 306 bp overlap
CTCF 2 datasets
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 158 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 195 bp overlap
EHF 1 dataset
ChIP primary-bronchial-epithelial GSE85401.EHF.primary-bronchial-epithelial 157 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 261 bp overlap
EP300 2 datasets
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.EP300.pulmonary-artery_endothelial-cell_siCtrl 286 bp overlap
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.EP300.pulmonary-artery_endothelial-cell_siPFKFB3 116 bp overlap
ERF 1 dataset
ChIP HAEC_TNFa_4h GSE89970.ERF.HAEC_TNFa_4h 191 bp overlap
ERG 31 datasets
ChIP HAEC GSE89970.ERG.HAEC 201 bp overlap
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 247 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 243 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ERG.HUVEC-C_VEGF_12h 134 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.ERG.HUVEC-C_VEGF_1h 107 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ERG.HUVEC-C_VEGF_4h 149 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 214 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 219 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 269 bp overlap
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 250 bp overlap
ChIP aortic-endothelial-cell_D14 GSE139377.ERG.aortic-endothelial-cell_D14 217 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 245 bp overlap
ChIP aortic-endothelial-cell_D17 GSE139377.ERG.aortic-endothelial-cell_D17 218 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 258 bp overlap
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 231 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 213 bp overlap
ChIP aortic-endothelial-cell_D26 GSE139377.ERG.aortic-endothelial-cell_D26 200 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 234 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 265 bp overlap
ChIP aortic-endothelial-cell_D38 GSE139377.ERG.aortic-endothelial-cell_D38 225 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 221 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 266 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 226 bp overlap
ChIP aortic-endothelial-cell_D44 GSE139377.ERG.aortic-endothelial-cell_D44 222 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 358 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 236 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 277 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 201 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 245 bp overlap
ChIP aortic-endothelial-cell_D53 GSE139377.ERG.aortic-endothelial-cell_D53 197 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 227 bp overlap
ETS1 13 datasets
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 217 bp overlap
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 191 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 191 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 244 bp overlap
ChIP HUVEC-C_1h GSE93030.ETS1.HUVEC-C_1h 216 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 231 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 358 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 244 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 283 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.ETS1.HUVEC-C_VEGF_1h 216 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 263 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 231 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.ETS1.HUVEC-C_modETS1 140 bp overlap
FLI1 3 datasets
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 213 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.FLI1.HUVEC-C_VEGF_12h 148 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.FLI1.HUVEC-C_VEGF_1h 153 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 269 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 223 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 358 bp overlap
ChIP DE DE-FOXA2-2 355 bp overlap
GATA2 3 datasets
ChIP TF1 GSE73207.GATA2.TF1 294 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 358 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 358 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 358 bp overlap
ChIP DE DE-GATA4-2 358 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 190 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 358 bp overlap
ChIP DE DE-GATA6-2 358 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 355 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 358 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 358 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 173 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 358 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 358 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 318 bp overlap
GFI1B 2 datasets
ChIP SET-2 GSE121424.GFI1B.SET-2 358 bp overlap
ChIP SET-2_GSK GSE121424.GFI1B.SET-2_GSK 208 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 143 bp overlap
GTF2E2 2 datasets
ChIP K562 ENCFF741URT 358 bp overlap
ChIP K562 ENCFF741URT 163 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 188 bp overlap
HMG20A 1 dataset
ChIP K562 ENCFF840WDB 351 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 259 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 290 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 313 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 285 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 237 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 208 bp overlap
JUNB 2 datasets
ChIP HAEC GSE89970.JUNB.HAEC 249 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 358 bp overlap
KDM1A 1 dataset
ChIP SET-2 GSE121424.KDM1A.SET-2 245 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 158 bp overlap
ChIP K562 ENCFF464PIV 236 bp overlap
KMT2A 3 datasets
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 182 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 341 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 194 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 358 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 278 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 296 bp overlap
MYC 3 datasets
ChIP P493-6 GSE77061.MYC.P493-6 194 bp overlap
ChIP PAVE GSE47152.MYC.PAVE 131 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 118 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 318 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 174 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 327 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 273 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 71 bp overlap
POLR2A 6 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 283 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 114 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 358 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 274 bp overlap
ChIP spleen ENCFF044PYR 168 bp overlap
ChIP spleen ENCFF446ZGT 161 bp overlap
RAD21 3 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 239 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 93 bp overlap
ChIP liver ENCFF522JHE 249 bp overlap
RELA 34 datasets
ChIP HAEC GSE89970.RELA.HAEC 259 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 276 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 269 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 266 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 266 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 338 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 210 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 330 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 349 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 298 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 314 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 358 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 313 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 320 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 240 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 288 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 287 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 215 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 310 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 346 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 273 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 358 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 213 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 269 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 358 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 341 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 279 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 288 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 201 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 358 bp overlap
REST 1 dataset
ChIP K-562 ENCSR137ZMQ.REST.K-562 157 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 103 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 353 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 358 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 299 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 358 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 324 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 320 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 336 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 127 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 121 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 209 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 236 bp overlap
SMARCA4 1 dataset
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 353 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 358 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 250 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 282 bp overlap
ChIP K562 ENCFF059YCJ 358 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 160 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 333 bp overlap
STAG1 1 dataset
ChIP HCAEC GSE101921.STAG1.HCAEC 158 bp overlap
STAT1 2 datasets
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 358 bp overlap
ChIP SET-2_cortistatin-A GSE100566.STAT1.SET-2_cortistatin-A 183 bp overlap
TAL1 5 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 358 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 222 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 150 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 148 bp overlap
ChIP K562 ENCFF661CCK 208 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 171 bp overlap
ChIP K562 ENCFF931DJY 229 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 195 bp overlap
ChIP K562 ENCFF319QZT 266 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 358 bp overlap
TFAP4 3 datasets
ChIP DLD-1 GSE46935.TFAP4.DLD-1 313 bp overlap
ChIP K562 ENCFF727PXG 358 bp overlap
ChIP K562 ENCFF727PXG 346 bp overlap
TFCP2 1 dataset
ChIP K562 ENCFF984WXL 172 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 358 bp overlap
ChIP K562 ENCFF731UTU 243 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 158 bp overlap