chr2 : 100,603,956 – 100,604,191
235 bp 58 TFs 1 linked gene
This 235 bp open chromatin element is linked to LINC01849 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01849 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:100,598,956 – 100,609,191
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 133 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 230 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 87 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 182 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 109 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 55 bp overlap
BRD4 14 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 99 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 230 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 222 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 235 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 211 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 235 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 235 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 102 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 98 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 68 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 140 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 226 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 223 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 235 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 235 bp overlap
CTCF 2 datasets
ChIP gastroesophageal sphincter ENCFF569YIT 176 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 135 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 132 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 134 bp overlap
ChIP esophagus muscularis mucosa ENCFF406RGZ 78 bp overlap
ChIP gastroesophageal sphincter ENCFF211FPL 61 bp overlap
ChIP gastroesophageal sphincter ENCFF309DOR 100 bp overlap
ESR1 3 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 149 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 106 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 88 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 193 bp overlap
FOSL1 1 dataset
ChIP HCT116 ENCFF540ZXN 139 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 100 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 66 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 235 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 195 bp overlap
ChIP DE DE-GATA6-2 235 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 235 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 149 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 235 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 54 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 60 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 56 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 218 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 235 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 95 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 178 bp overlap
MEF2A 1 dataset
ChIP SK-N-SH ENCFF053MLP 143 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 165 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 112 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 235 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 235 bp overlap
ChIP hESC GSE18292.NANOG.hESC 162 bp overlap
NFATC1 1 dataset
ChIP HUVEC-C_VEGF GSE49428.NFATC1.HUVEC-C_VEGF 111 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 116 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 235 bp overlap
PGR 3 datasets
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 158 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 235 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 71 bp overlap
POLR2A 5 datasets
ChIP esophagus muscularis mucosa ENCFF759BBR 235 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 126 bp overlap
ChIP neural cell ENCFF604SPB 78 bp overlap
ChIP sigmoid colon ENCFF101ILL 70 bp overlap
ChIP sigmoid colon ENCFF754JQR 135 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 235 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 235 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 178 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 216 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 132 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 119 bp overlap
RELA 2 datasets
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 58 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 79 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 235 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 202 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 142 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 216 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 143 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 219 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 196 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 235 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 55 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 235 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 110 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 153 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 169 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 235 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 56 bp overlap
ChIP neural cell ENCFF795YGY 235 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 226 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 123 bp overlap
ChIP glioma_stem GSE67282.SOX2.glioma_stem 99 bp overlap
ChIP hESC GSE18292.SOX2.hESC 156 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 235 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 112 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 229 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 170 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 235 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 212 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 173 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 115 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 231 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 108 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 142 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 120 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 174 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 200 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 179 bp overlap
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