chr2 : 40,270,503 40,271,544
1,041 bp 92 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 92 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:40,265,503 – 40,276,544
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
Atoh1 1 dataset
Motif DE_36h DE_36h-Atoh1_MA0461.3 8 bp overlap
BCL6 1 dataset
Motif DE_36h DE_36h-BCL6_MA0463.3 13 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 285 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 250 bp overlap
CLOCK 1 dataset
ChIP BA10_2 GSE96659.CLOCK.BA10_2 129 bp overlap
CTCFL 1 dataset
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 242 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 137 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 161 bp overlap
EOMES 1 dataset
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 104 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
GATA2 4 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 350 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 451 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 205 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 213 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 175 bp overlap
GATA4 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 320 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 7 datasets
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 800 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 573 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 427 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 890 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 596 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 376 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
ChIP Kelly GSE94822.HAND2.Kelly 157 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 441 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 290 bp overlap
HES1 1 dataset
ChIP MCF-7 ENCSR109ODF.HES1.MCF-7 130 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 487 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 337 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
KLF14 2 datasets
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
KLF5 3 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 467 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 372 bp overlap
MAZ 2 datasets
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 327 bp overlap
ChIP HepG2 ENCFF701PYP 129 bp overlap
MXI1 1 dataset
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 264 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 215 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 175 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 227 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 870 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
PAX2 1 dataset
Motif DE_36h DE_36h-PAX2_MA0067.3 16 bp overlap
PAX5 3 datasets
ChIP NALM-6 GSE115764.PAX5.NALM-6 321 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 202 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 209 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 144 bp overlap
PRDM9 2 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
REST 1 dataset
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 501 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 374 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 434 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 1005 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 221 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 123 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP4 2 datasets
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF21 1 dataset
Motif DE_36h DE_36h-TCF21_MA1568.2 10 bp overlap
TCF7L1 2 datasets
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
USF1 1 dataset
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
Wt1 2 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZBTB18 1 dataset
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZBTB24 1 dataset
Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap
ZBTB6 1 dataset
Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZNF148 2 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF257 1 dataset
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF281 2 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF528 1 dataset
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF701 2 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZNF740 2 datasets
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF816 1 dataset
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap