chrX : 150,990,944 – 150,991,277

333 bp 62 TFs 1 linked gene

This 333 bp open chromatin element is linked to HMGB3 and is bound by 62 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
HMGB3		7.6 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

AFF4 1 dataset

ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 147 bp overlap

AGO1 2 datasets

ChIP K-562 GSE120104.AGO1.K-562 308 bp overlap

ChIP K-562 ENCSR641BSL.AGO1.K-562 312 bp overlap

AR 2 datasets

ChIP MCF-7 GSE48930.AR.MCF-7 235 bp overlap

ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 219 bp overlap

ARID2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 121 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 272 bp overlap

BCL3 1 dataset

ChIP A-549 ENCSR000BQH.BCL3.A-549 333 bp overlap

BRCA1 1 dataset

ChIP MCF-10A GSE40591.BRCA1.MCF-10A 223 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 220 bp overlap

CEBPA 2 datasets

ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 137 bp overlap

ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 180 bp overlap

CREB1 1 dataset

ChIP A-549 ENCSR000BRB.CREB1.A-549 329 bp overlap

E2F1 1 dataset

ChIP HeLa GSE22478.E2F1.HeLa 161 bp overlap

EMX1 1 dataset

ChIP WTC11 ENCFF692RZJ 252 bp overlap

ERG 1 dataset

ChIP WTC11 ENCFF011YUL 180 bp overlap

ESR1 6 datasets

ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 129 bp overlap

ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 87 bp overlap

ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 97 bp overlap

ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 186 bp overlap

ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 128 bp overlap

ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 135 bp overlap

ESR1_Y537S 1 dataset

ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 113 bp overlap

FOSL1 1 dataset

ChIP BT-549 GSE112961.FOSL1.BT-549 201 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 187 bp overlap

FOXA2 1 dataset

ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 230 bp overlap

GATA2 1 dataset

ChIP SKH1 GSE87283.GATA2.SKH1 210 bp overlap

GATA3 4 datasets

ChIP MCF-7 ENCFF437NQS 179 bp overlap

ChIP MCF-7 ENCFF437NQS 319 bp overlap

ChIP MCF-7 GSE122847.GATA3.MCF-7 118 bp overlap

ChIP MCF-7 GSE133072.GATA3.MCF-7 118 bp overlap

GATA6 3 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 242 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 267 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 93 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 290 bp overlap

HOXA7 1 dataset

ChIP A-549 ENCSR402OYZ.HOXA7.A-549 66 bp overlap

HOXB8 1 dataset

ChIP PANC-1 GSE119930.HOXB8.PANC-1 274 bp overlap

JUN 1 dataset

ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 190 bp overlap

JUND 2 datasets

ChIP A-549 ENCSR000BRF.JUND.A-549 319 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 134 bp overlap

LHX2 1 dataset

ChIP retina_pigment GSE60024.LHX2.retina_pigment 222 bp overlap

MED1 1 dataset

ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 182 bp overlap

MYC 1 dataset

ChIP CD34 GSE85488.MYC.CD34 192 bp overlap

NCOA2 1 dataset

ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap

NFATC1 1 dataset

ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 333 bp overlap

NFIC 2 datasets

ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 127 bp overlap

ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 123 bp overlap

NFKB1 1 dataset

ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 120 bp overlap

NONO 1 dataset

ChIP K-562 ENCSR010KFT.NONO.K-562 142 bp overlap

NR2F2 1 dataset

ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 64 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BJR.NR3C1.A-549 112 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 100 bp overlap

PAF1 1 dataset

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 333 bp overlap

PARP1 1 dataset

ChIP MCF-10A GSE93038.PARP1.MCF-10A 151 bp overlap

PGR 1 dataset

ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 159 bp overlap

POLR2A 2 datasets

ChIP GM12892 ENCFF245LYF 333 bp overlap

ChIP H1 ENCFF833NJP 322 bp overlap

POU5F1 1 dataset

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 333 bp overlap

PRRX2 1 dataset

ChIP WTC11 ENCFF107JGJ 230 bp overlap

RBM22 2 datasets

ChIP K-562 GSE120104.RBM22.K-562 256 bp overlap

ChIP K-562 ENCSR848AOP.RBM22.K-562 207 bp overlap

RELA 1 dataset

ChIP KB_IL GSE52469.RELA.KB_IL 111 bp overlap

RUNX2 1 dataset

ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 249 bp overlap

SIN3A 4 datasets

ChIP MCF-7 ENCFF521RDC 221 bp overlap

ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 119 bp overlap

ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 145 bp overlap

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 129 bp overlap

SMAD3 3 datasets

ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 179 bp overlap

ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 196 bp overlap

ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 297 bp overlap

SMARCA4 1 dataset

ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 268 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 209 bp overlap

SMARCC1 1 dataset

ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 59 bp overlap

SOX4 1 dataset

ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 158 bp overlap

SUPT5H 5 datasets

ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 282 bp overlap

ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 333 bp overlap

ChIP HeLa GSE125534.SUPT5H.HeLa 118 bp overlap

ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 84 bp overlap

ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 154 bp overlap

SUPT6H 1 dataset

ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 306 bp overlap

TCF7L2 1 dataset

ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 333 bp overlap

TFAP2C 1 dataset

ChIP HCC1954 GSE126897.TFAP2C.HCC1954 189 bp overlap

XRCC5 1 dataset

ChIP K-562 GSE120104.XRCC5.K-562 144 bp overlap

ZNF449 2 datasets

ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 239 bp overlap

ChIP HEK293 GSE76494.ZNF449.HEK293 141 bp overlap

ZNF528 1 dataset

ChIP HEK293 GSE76494.ZNF528.HEK293 239 bp overlap

ZNF671 1 dataset

ChIP WTC11 ENCFF053HBV 265 bp overlap

ZNF770 1 dataset

ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 261 bp overlap