chrX : 114,581,505 – 114,581,929
424 bp 71 TFs 1 linked gene
This 424 bp open chromatin element is linked to HTR2C and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HTR2C 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:114,576,505 – 114,586,929
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 424 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 286 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 424 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 424 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 277 bp overlap
ChIP hESC GSE33281.BRD4.hESC 126 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 259 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 308 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 65 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 69 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 424 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 424 bp overlap
CTCF 29 datasets
ChIP C4-2B ENCFF821XVN 424 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 415 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 344 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 146 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 116 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 188 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.CTCF.THP-1_PMA_Dex-0h 182 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 161 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 214 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 183 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 160 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 195 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 203 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 190 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 192 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 210 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 131 bp overlap
ChIP endodermal cell ENCFF471YCZ 336 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 314 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 274 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 146 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 322 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 107 bp overlap
ChIP neural progenitor cell ENCFF420RBO 353 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 255 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 310 bp overlap
ChIP BLaER1 ENCFF460KDD 260 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 164 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 424 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 126 bp overlap
ERG 1 dataset
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 254 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE48930.ESR1.MCF-7 168 bp overlap
EZH2 27 datasets
ChIP A673 ENCFF790MVL 190 bp overlap
ChIP A673 ENCFF790MVL 236 bp overlap
ChIP A673 ENCFF955JRZ 240 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 244 bp overlap
ChIP GM23338 ENCFF613YON 198 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 424 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 424 bp overlap
ChIP SK-N-MC ENCFF674XUJ 424 bp overlap
ChIP SK-N-MC ENCFF674XUJ 424 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 424 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 424 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 322 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 424 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 424 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 424 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 423 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 365 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 424 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 424 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 235 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 233 bp overlap
ChIP hepatocyte ENCFF552DZB 424 bp overlap
ChIP keratinocyte ENCFF070STK 377 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 424 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 424 bp overlap
ChIP neural progenitor cell ENCFF018MKA 424 bp overlap
ChIP neural progenitor cell ENCFF472NFV 424 bp overlap
EZH2_phosphoT487 1 dataset
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 424 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 179 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 127 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 299 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 325 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 274 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 257 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 424 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 424 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 233 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 424 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 244 bp overlap
JUN 1 dataset
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 129 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 363 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 210 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 397 bp overlap
MAX 4 datasets
ChIP H1 ENCFF601FOM 235 bp overlap
ChIP H1 ENCFF914VQY 176 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 174 bp overlap
ChIP WTC11 ENCFF223QFY 423 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MXI1 4 datasets
ChIP H1 ENCFF963FZS 337 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 174 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 258 bp overlap
ChIP neural cell ENCFF623HQN 364 bp overlap
MYC 8 datasets
ChIP CD34 GSE85488.MYC.CD34 186 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 158 bp overlap
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 134 bp overlap
ChIP U2OS_Doxy GSE77328.MYC.U2OS_Doxy 78 bp overlap
ChIP U2OS_EtOH GSE77328.MYC.U2OS_EtOH 143 bp overlap
ChIP U2OS_HA-OmoMYCwt_Doxy GSE77328.MYC.U2OS_HA-OmoMYCwt_Doxy 120 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 94 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 165 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 303 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 225 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 411 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 91 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 225 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 412 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 222 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 180 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 233 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 406 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 376 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 318 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 347 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 424 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 205 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 249 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 295 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 258 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 235 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
RAD21 11 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 330 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 210 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 172 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 317 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 285 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 131 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 174 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 179 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 170 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 369 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 265 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 162 bp overlap
RNF2 4 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 190 bp overlap
ChIP H1 ENCFF239FFS 424 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 424 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 424 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 162 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 162 bp overlap
RXRA::VDR 1 dataset
Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 424 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 168 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 116 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 172 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 245 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 222 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 173 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 73 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 361 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 424 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 424 bp overlap
ChIP H1 ENCFF881NFR 424 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 367 bp overlap
ChIP K562 ENCFF397TBJ 309 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 300 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 370 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 103 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 204 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 223 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 201 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 138 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 249 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 253 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 131 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 82 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 187 bp overlap
ChIP WTC11 ENCFF699QGS 362 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 159 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 255 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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