chrX : 100,410,864 – 100,411,474
610 bp 92 TFs 1 linked gene
This 610 bp open chromatin element is linked to PCDH19 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCDH19 591 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:100,405,864 – 100,416,474
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 136 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 208 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 266 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 245 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 610 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 589 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 202 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 178 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 594 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 340 bp overlap
Bhlha15 1 dataset
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 152 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 203 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 232 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 118 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 164 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 236 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 241 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE48930.ESR1.MCF-7 171 bp overlap
EZH2 33 datasets
ChIP A673 ENCFF790MVL 253 bp overlap
ChIP A673 ENCFF790MVL 169 bp overlap
ChIP A673 ENCFF955JRZ 253 bp overlap
ChIP A673 ENCFF955JRZ 181 bp overlap
ChIP GM23248 ENCFF404ZHM 89 bp overlap
ChIP GM23338 ENCFF613YON 353 bp overlap
ChIP H1 ENCFF232NZA 610 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 557 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 513 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 546 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 218 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 610 bp overlap
ChIP PC-3 ENCFF855OUB 577 bp overlap
ChIP PC-3 ENCFF928VSN 485 bp overlap
ChIP PC-3 ENCFF928VSN 363 bp overlap
ChIP T-REx-293_K27WT GSE118954.EZH2.T-REx-293_K27WT 305 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 507 bp overlap
ChIP T98G GSE112240.EZH2.T98G 450 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 610 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 610 bp overlap
ChIP astrocyte ENCFF365JTP 610 bp overlap
ChIP astrocyte ENCFF365JTP 387 bp overlap
ChIP astrocyte ENCFF365JTP 180 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 610 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 610 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 610 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 537 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 325 bp overlap
ChIP hESC GSE113817.EZH2.hESC 380 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 208 bp overlap
ChIP neural progenitor cell ENCFF018MKA 610 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 298 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 288 bp overlap
EZH2_phosphoT487 6 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 398 bp overlap
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 109 bp overlap
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 606 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 318 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 146 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 565 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 330 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 270 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 369 bp overlap
HDAC2 1 dataset
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 183 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 291 bp overlap
HINFP 1 dataset
Motif DE_12h DE_12h-HINFP_MA0131.3 8 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 583 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 338 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 242 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 568 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 253 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 182 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 113 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 215 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 610 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 291 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 291 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 332 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 498 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 442 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 308 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 388 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 375 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 283 bp overlap
RNF2 6 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 252 bp overlap
ChIP A-549 ENCSR798EGJ.RNF2.A-549 214 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 421 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 455 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 223 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 85 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 610 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 610 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 608 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 508 bp overlap
SMAD2_3 1 dataset
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 307 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 389 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 246 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 427 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 374 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SPI1 1 dataset
ChIP ME-1 GSE46044.SPI1.ME-1 301 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 470 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 392 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 364 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 551 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 249 bp overlap
SUZ12 6 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 272 bp overlap
ChIP H1 ENCFF881NFR 610 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 238 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 322 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 353 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 157 bp overlap
TBP 1 dataset
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 473 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 204 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 319 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 519 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 282 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 224 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 404 bp overlap
ZBTB20 3 datasets
ChIP HEK293 ENCFF524ADK 281 bp overlap
ChIP HEK293 ENCFF524ADK 478 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 589 bp overlap
ZBTB26 4 datasets
ChIP HEK293 ENCFF752POA 610 bp overlap
ChIP HEK293 ENCFF752POA 191 bp overlap
ChIP HEK293 ENCFF752TCU 610 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 461 bp overlap
ZBTB32 1 dataset
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 416 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZFP64 2 datasets
ChIP HEK293 GSE76494.ZFP64.HEK293 290 bp overlap
ChIP HEK293 GSE76494.ZFP64.HEK293 156 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 530 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 144 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 610 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 610 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 255 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 270 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
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