chrX : 24,999,493 24,999,917
424 bp 66 TFs 1 linked gene
This 424 bp open chromatin element is linked to ARX and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ARX 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:24,994,493 – 25,004,917
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 424 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 159 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 424 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 289 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 170 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 410 bp overlap
BRD4 3 datasets
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 386 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 291 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 345 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 424 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 74 bp overlap
CRX 2 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 203 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 370 bp overlap
CTCF 11 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 206 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 121 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 195 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 135 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 424 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 56 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 166 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 424 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 424 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 177 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 148 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 424 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 293 bp overlap
EZH2 6 datasets
ChIP A673 ENCFF790MVL 314 bp overlap
ChIP A673 ENCFF790MVL 424 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 255 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 334 bp overlap
ChIP neural progenitor cell ENCFF018MKA 424 bp overlap
ChIP neural progenitor cell ENCFF472NFV 359 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 308 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 308 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 146 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 367 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 277 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 424 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 421 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 342 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 424 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 421 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 412 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 204 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 285 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2D 2 datasets
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 296 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 259 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 424 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 313 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 180 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 424 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 424 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 424 bp overlap
ChIP hESC GSE20650.NANOG.hESC 226 bp overlap
ChIP hESC GSE18292.NANOG.hESC 286 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 424 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 424 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 203 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 366 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 189 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 294 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 10 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 325 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 424 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 357 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 325 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 285 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 162 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 51 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 424 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 424 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 331 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 387 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 424 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 424 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 424 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 424 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 247 bp overlap
RNF2 2 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 277 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 237 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 361 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 424 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 424 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 424 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 424 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 316 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 290 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 224 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 274 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 261 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 318 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 418 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 236 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 339 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 322 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 319 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 241 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 215 bp overlap
ChIP hESC GSE18292.SOX2.hESC 182 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 424 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 296 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 141 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SUZ12 5 datasets
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 256 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 215 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 299 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 421 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 424 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 354 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 125 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 366 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 340 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap