chr20:64,160,199–64,160,889

chr20 : 64,160,199 – 64,160,889

690 bp 55 TFs 9 linked genes

This 690 bp open chromatin element is linked to 9 target genes and is bound by 55 transcription factors.

Linked Genes

9 genes

Gene	Expression	Dist. to TSS	Distance	Link type
MYT1		58.1 kb	Distal	Multiome
RGS19		80.7 kb	Distal	Multiome
PCMTD2		95.3 kb	Distal	Multiome
TCEA2		97.3 kb	Distal	Multiome
PRPF6		179.4 kb	Distal	Multiome
ZNF512B		190.6 kb	Distal	Multiome
UCKL1		204.1 kb	Distal	Multiome
DNAJC5		265.4 kb	Distal	Multiome
TPD52L2		295.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

AGO1 2 datasets

ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 155 bp overlap

ChIP Hep-G2 GSE120104.AGO1.Hep-G2 155 bp overlap

ChIP HepG2 ENCFF889AMU 130 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 50 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 71 bp overlap

BORCS8-MEF2B,MEF2B 1 dataset

ChIP GM12878 ENCFF427QAI 431 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 67 bp overlap

BRD4 8 datasets

ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 203 bp overlap

ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 194 bp overlap

ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 243 bp overlap

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 182 bp overlap

ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 128 bp overlap

ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 274 bp overlap

ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 204 bp overlap

ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 690 bp overlap

CREB1 1 dataset

ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 223 bp overlap

CTCF 3 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 157 bp overlap

ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 367 bp overlap

ChIP endodermal cell ENCFF471YCZ 210 bp overlap

ChIP GM12878 ENCSR439WAF.E4F1.GM12878 109 bp overlap

ChIP HEK293 ENCFF336LFH 221 bp overlap

ESR1 5 datasets

ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 222 bp overlap

ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 106 bp overlap

ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 209 bp overlap

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 120 bp overlap

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 113 bp overlap

EZH2 2 datasets

ChIP SF8628 GSE94834.EZH2.SF8628 136 bp overlap

ChIP THP-1 GSE135024.EZH2.THP-1 191 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 142 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 292 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 311 bp overlap

ChIP DE DE-GATA6-2 307 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 301 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 392 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 317 bp overlap

GLIS2 1 dataset

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 66 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 662 bp overlap

HAND2 2 datasets

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 212 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 265 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 394 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 591 bp overlap

KMT2A 4 datasets

ChIP MOLM-13_DMSO-D3-180110 GSE127507.KMT2A.MOLM-13_DMSO-D3-180110 154 bp overlap

ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 282 bp overlap

ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 95 bp overlap

ChIP RS4-11_VTP-d3-180402 GSE127507.KMT2A.RS4-11_VTP-d3-180402 231 bp overlap

ChIP HEK293 ENCFF994GSG 258 bp overlap

ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 111 bp overlap

ChIP HEK293 GSE76494.MAZ.HEK293 142 bp overlap

MEF2B 1 dataset

ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 308 bp overlap

ChIP GM12878 ENCSR293QAR.MTA2.GM12878 221 bp overlap

ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 313 bp overlap

ChIP Kelly GSE138295.MYC.Kelly 82 bp overlap

MYCN 6 datasets

ChIP CHP-134 GSE129588.MYCN.CHP-134 97 bp overlap

ChIP Kelly GSE94822.MYCN.Kelly 187 bp overlap

ChIP Kelly GSE94782.MYCN.Kelly 185 bp overlap

ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 183 bp overlap

ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 444 bp overlap

ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 134 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 118 bp overlap

PAX3-FOXO1 1 dataset

ChIP Hs-352-Sk GSE83725.PAX3-FOXO1.Hs-352-Sk 203 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 112 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 256 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 385 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 284 bp overlap

PRDM15 1 dataset

ChIP WTC11 ENCFF108TMF 217 bp overlap

RBM39 1 dataset

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 60 bp overlap

REST 8 datasets

ChIP GM23338 ENCSR871KYB.REST.GM23338 106 bp overlap

ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 132 bp overlap

ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 113 bp overlap

ChIP PANC-1 ENCSR000BJO.REST.PANC-1 100 bp overlap

ChIP PANC-1 ENCSR000BJO.REST.PANC-1 192 bp overlap

ChIP WA01 ENCSR000BHM.REST.WA01 136 bp overlap

ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 116 bp overlap

ChIP neural ENCSR000BTV.REST.neural 64 bp overlap

RUNX1 1 dataset

ChIP Jurkat GSE85524.RUNX1.Jurkat 196 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 171 bp overlap

SIX4 2 datasets

ChIP WTC11 ENCFF891HYW 377 bp overlap

ChIP WTC11 ENCFF891HYW 377 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 690 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 690 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 690 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 690 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 690 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 690 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 690 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 690 bp overlap

SMARCA4 5 datasets

ChIP NGP GSE134626.SMARCA4.NGP 140 bp overlap

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 168 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 509 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 56 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 209 bp overlap

SMARCB1 1 dataset

ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 66 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 292 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 690 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 690 bp overlap

SUZ12 4 datasets

ChIP Aska-SS GSE108025.SUZ12.Aska-SS 147 bp overlap

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 430 bp overlap

ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 175 bp overlap

ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 333 bp overlap

ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 158 bp overlap

TRIM25 1 dataset

ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 148 bp overlap

TWIST1 1 dataset

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 213 bp overlap

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 159 bp overlap

ZBTB48 2 datasets

ChIP U2OS GSE96776.ZBTB48.U2OS 320 bp overlap

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 418 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 273 bp overlap

ZNF398 1 dataset

ChIP H9 GSE133630.ZNF398.H9 105 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 244 bp overlap