chr20 : 58,546,673 58,547,327
654 bp 69 TFs 9 linked genes
This 654 bp open chromatin element is linked to 9 target genes and is bound by 69 transcription factors.
Linked Genes
9 genes
Gene Expression Dist. to TSS Distance Link type
APCDD1L-DT 31.5 kb Distal Multiome
APCDD1L 31.9 kb Distal Multiome
STX16 104.2 kb Distal Multiome
NPEPL1 145.8 kb Distal Multiome
VAPB 157.8 kb Distal Multiome
RAB22A 237.3 kb Distal Multiome
ENSG00000291067 237.6 kb Distal Multiome
ENSG00000268649 270.7 kb Distal Multiome
GNAS 294.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:58,541,673 – 58,552,327
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 224 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 327 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 222 bp overlap
BRD4 8 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 387 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 124 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 55 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 499 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 239 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 154 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 129 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 549 bp overlap
CBFB 1 dataset
ChIP SKNO-1 GSE23730.CBFB.SKNO-1 214 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 210 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 303 bp overlap
CDX1 1 dataset
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_48h DE_48h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 107 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 312 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 286 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 143 bp overlap
ESR1 3 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 355 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 313 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 339 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 166 bp overlap
EZH2 5 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 469 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 429 bp overlap
ChIP HepG2 ENCFF912EIW 578 bp overlap
ChIP HepG2 ENCFF912EIW 585 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 315 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 394 bp overlap
ChIP DE DE-FOXA2-2 417 bp overlap
FOXF2 1 dataset
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
FOXK1 1 dataset
Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 162 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 377 bp overlap
ChIP SK-N-SH ENCFF764OZD 340 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 418 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 218 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 320 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 290 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 196 bp overlap
ChIP SK-N-SH ENCFF040SSB 296 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 412 bp overlap
ChIP DE DE-GATA4-2 470 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 355 bp overlap
ChIP foregut GSE117136.GATA4.foregut 312 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 606 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 138 bp overlap
ChIP DE DE-GATA6-1 525 bp overlap
ChIP DE DE-GATA6-2 494 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 206 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 520 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 237 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 289 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 343 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 654 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 527 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 215 bp overlap
HOXD9 1 dataset
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 416 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 219 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 206 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 519 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 350 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 180 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 343 bp overlap
MYCN 11 datasets
ChIP BE2C GSE80151.MYCN.BE2C 258 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 131 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 412 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 558 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 212 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 236 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 111 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 464 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 509 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 465 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 258 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 236 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 592 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 165 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 335 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 374 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 654 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 432 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 389 bp overlap
SMARCA4 8 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 316 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 379 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 221 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 293 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 67 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 477 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 214 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 139 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 196 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 517 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 563 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
TBX2 3 datasets
ChIP Kelly GSE94822.TBX2.Kelly 288 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 173 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 207 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 366 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 366 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 182 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 147 bp overlap
ChIP BE2C GSE80151.TWIST1.BE2C 274 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 147 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 274 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 99 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 74 bp overlap
ZNF257 1 dataset
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
ZNF341 2 datasets
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 265 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 164 bp overlap
ZNF669 1 dataset
Motif DE_48h DE_48h-ZNF669_MA1985.1 15 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 148 bp overlap