chr20 : 55,165,866 – 55,166,454
588 bp 113 TFs 0 linked genes
This 588 bp open chromatin element has no linked target genes and is bound by 113 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:55,160,866 – 55,171,454
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
113 transcription factors
Source
Cell type
AHRR 1 dataset
ChIP MCF-7_DMSO_1d GSE90550.AHRR.MCF-7_DMSO_1d 149 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 184 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 117 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 296 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 279 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
CTCF 6 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 209 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 201 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 281 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
DMRTA1 2 datasets
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 2 datasets
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
Motif ES_0h ES_0h-DMRTC2_MA1479.2 11 bp overlap
Dux 3 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F7 2 datasets
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 170 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::HOXB13 2 datasets
Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap
Motif ES_0h ES_0h-ETV2HOXB13_MA1943.2 13 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 368 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FOXA1 3 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
Motif ES_0h ES_0h-FOXA1_MA0148.5 8 bp overlap
FOXD2 2 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 3 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXH1 3 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 161 bp overlap
GLI3 2 datasets
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Motif ES_0h ES_0h-GLI3_MA1491.3 15 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
Gli1 2 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 249 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 145 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 270 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 2 datasets
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
LCORL 2 datasets
ChIP Hep-G2 ENCSR950NAZ.LCORL.Hep-G2 243 bp overlap
ChIP HepG2 ENCFF659AVU 357 bp overlap
LIN54 3 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif ES_0h ES_0h-MGAEVX1_MA1960.2 11 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 438 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 230 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 196 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 457 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 302 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 288 bp overlap
ChIP hESC GSE18292.NANOG.hESC 132 bp overlap
NCOA1 2 datasets
ChIP MCF-7 ERP000901.NCOA1.MCF-7 143 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 143 bp overlap
NFIA 3 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
ChIP K-562 GSE97661.NFIA.K-562 202 bp overlap
NFIB 6 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
ChIP MCF-7 ENCFF799WGQ 363 bp overlap
ChIP MCF-7 ENCFF925CGH 389 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 478 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 472 bp overlap
NFIC 4 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif ES_0h ES_0h-NFIC_MA1527.2 15 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 415 bp overlap
ChIP K562 ENCFF167YID 405 bp overlap
NFIC::TLX1 2 datasets
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 6 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
ChIP K-562 ENCSR574VJG.NFIX.K-562 245 bp overlap
ChIP K562 ENCFF382SJS 301 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 224 bp overlap
NR1D1 2 datasets
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
NR1D2 2 datasets
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 135 bp overlap
Nr2F6 2 datasets
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 341 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 346 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 310 bp overlap
PPARG 2 datasets
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Motif ES_0h ES_0h-PPARG_MA0066.2 19 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 196 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 119 bp overlap
RORA 3 datasets
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Motif DE_48h DE_48h-RORA_MA0071.1 10 bp overlap
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
RUNX2 2 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
Motif ES_0h ES_0h-RUNX2_MA0511.2 9 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 111 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 197 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 434 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 441 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 377 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 517 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 400 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 387 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 431 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 397 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 367 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 275 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 210 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 351 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 486 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 369 bp overlap
SOX10 4 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 576 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 340 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 203 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 141 bp overlap
SP4 3 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 216 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 139 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Tfcp2l1 2 datasets
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 3 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 113 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 179 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 190 bp overlap
ZBTB12 2 datasets
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZBTB7B 2 datasets
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
Motif ES_0h ES_0h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 2 datasets
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB7C_MA0695.2 8 bp overlap
ZFX 1 dataset
ChIP MCF-7 ENCSR435OQD.ZFX.MCF-7 375 bp overlap
ZKSCAN5 3 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF136 1 dataset
ChIP HEK293T GSE78099.ZNF136.HEK293T 287 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF189 2 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF257 3 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 3 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF354C 3 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF701 3 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF784 2 datasets
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Motif ES_0h ES_0h-ZNF784_MA1717.2 8 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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